PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00217g02009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 280aa MW: 32186 Da PI: 6.6831

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00217g02009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92	7.6e-29	116	203	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+r+etr+gC+a++ v+k ++gkw+vtk+++eH+ Niben101Scf00217g02009.1 116 FYNTYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRVETRVGCRAMILVRKVSSGKWVVTKFVKEHT 198 ****************************************9988..9******************************** PP FAR1 87 Helap 91 H+l+p Niben101Scf00217g02009.1 199 HPLSP 203 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-26	116	203	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MWISFSVEYL HSFKFFYVSK QITDATDATV DFVVDDHIIG EVEEGTVVEV RAVDENAVGG 60 SSSEEAFHDV HDVKVDDDLS DREVVPLEES QSLGNSTSDE PYVGQEFESE AAAHAFYNTY 120 ATRVGFIIRV SKLSRSRRDG SAIGRALVCN KEGFRMPDKR EKIVRQRVET RVGCRAMILV 180 RKVSSGKWVV TKFVKEHTHP LSPGKGRRDL IYDQYPNEHG KIRELSQQLA AEKKRSSTYK 240 RHLEMIFEHI EEHNQSLSKK IQDIVHNVRE MESRDQHHHR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605656.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_016478794.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_016513926.1	0.0	PREDICTED: uncharacterized protein LOC107830790
Swissprot	Q9SZL8	3e-27	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S4AQ33	0.0	A0A1S4AQ33_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1S4DKK4	1e-180	A0A1S4DKK4_TOBAC; uncharacterized protein LOC107830790
STRING	XP_009764132.1	1e-180	(Nicotiana sylvestris)
STRING	XP_009605656.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11568	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-104	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]