PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00220g02002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 332aa MW: 36127.8 Da PI: 6.7306

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00220g02002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.00032	207	243	14	55
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Niben101Scf00220g02002.1 207 EKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 243 56678888888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.045	193	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.40E-6	200	247	No hit	No description
SuperFamily	SSF47459	4.19E-10	205	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-7	207	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MMAGHPTNWW SMLMNGNNMH QQSQHISSSS SSSSHFYGVS NSSLADNSNQ DFPPRSLSHL 60 LLSGFSGDEE KFGISPFHQA GNSEDQNLNS VHIPSASNFR VNPNIDDVKP ELGQLYDYHH 120 HVQNEFQASL LQEKLELSTD FTKHAAYTCR PLLANSWSQH QDMPSPASSC ITTGLLNHNV 180 LNFSSNKSSK GELKHQHPDN SSEVRKEKLG DRITALHQLV SPFGKTDTAS VLSEAIGYIR 240 FLQGQIQALS SPYLGNASGS MGHISQQSAL SSPYLGNASG SMGHISQQSD SQHRTKDLRS 300 RGLCLVPISC MQNVGSDTGA DYWAPALGGS GF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016468406.1	0.0	PREDICTED: transcription factor bHLH68-like isoform X1
TrEMBL	A0A1S3ZVI2	0.0	A0A1S3ZVI2_TOBAC; transcription factor bHLH68-like isoform X1
STRING	XP_009608011.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	6e-46	bHLH family protein