PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00228g11012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 491aa    MW: 54150.7 Da    PI: 7.1193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00228g11012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-09311358455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Niben101Scf00228g11012.1 311 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 358
                               8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.53E-10305362No hitNo description
SuperFamilySSF474596.94E-17305375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663307357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16307372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6311358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10313363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEKDYFMNGG ITNPPLQFEP TVTMPFPSNW NSLHSGQSSD FFLNPNWDHD STLQFDSTLN  60
SIVSSSPAEL IGKLSTVSSS PQPPFNNNNI NTNNSCYTTP KLHMPNLGNS LPLNPPPPPL  120
PAVSTDPGFA QRAAKFSCFG SRSFNGRTSP LIHRSAQHLG NGKLPRVSSS PSLKQAGIPL  180
QIKNSSQTRM ELLSTNLGRP ITNSNESVSE PSRETGPKTP TELNSTRKRK TTSCGKTKEA  240
APANGNMGDD NARTKRCKQV VVEGNETEIE AVNMEESKGK NEGDETQNQK PPEPPKDYIH  300
VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ  360
VEFLSMKLAS VNPSLDFPAE NLLPKDICQP NGSLPQPVFP VNYQQHTHIP NELLSQCSAN  420
TLDNSLFHTL GMQLPSLDGL GEYLNQLPTM CEDDLQSIVQ MGFNQNPNKD QTLQSQSFPG  480
PHQTSHMKIE M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225230TRKRKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757727.10.0PREDICTED: transcription factor bHLH62-like
RefseqXP_016477458.10.0PREDICTED: transcription factor bHLH62-like isoform X1
TrEMBLA0A1S4AM050.0A0A1S4AM05_TOBAC; transcription factor bHLH62-like isoform X1
TrEMBLA0A1U7UNK70.0A0A1U7UNK7_NICSY; transcription factor bHLH62-like
STRINGXP_009757727.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-84bHLH family protein