PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00238g02005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 229aa MW: 26658.9 Da PI: 7.1651

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00238g02005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++l v+++G ++W+ +++ g+ R++k+c++rw +yl Niben101Scf00238g02005.1 14 RGAWSEEEDDKLRAFVEKYGHPNWRQLPKYAGLMRCGKSCRLRWMNYL 61 89********************************************97 PP
2	Myb_DNA-binding	52.8	9.3e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ + eE+el+++++++lG++ W++Ia++++ gR+++++k+ w+ + Niben101Scf00238g02005.1 67 KGNYSHEEEELIIKLHNELGNR-WSAIAKKLP-GRSDNDIKNQWHAH 111 7899****************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.298	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.07E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-16	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	2.38E-11	16	61	No hit	No description
PROSITE profile	PS51294	19.547	66	116	IPR017930	Myb domain
SMART	SM00717	7.2E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-15	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-25	69	115	IPR009057	Homeodomain-like
CDD	cd00167	1.62E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MVRTPSVDKH GIKRGAWSEE EDDKLRAFVE KYGHPNWRQL PKYAGLMRCG KSCRLRWMNY 60 LRPGLKKGNY SHEEEELIIK LHNELGNRWS AIAKKLPGRS DNDIKNQWHA HLKKRANIYT 120 NLSTSTEQFT ESSQSQQEAG CDMRESLSAS VNAADPSIEV SSSDLSKLYS NCSLLNGMDW 180 IEEDHIRSMQ QLSNIKPLPE DNFFNFCWTN PIDNFQTEPL DNFWRQPFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-26	14	117	7	109	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016447291.1	1e-122	PREDICTED: myb-related protein Myb4-like
TrEMBL	A0A1S3Y537	1e-121	A0A1S3Y537_TOBAC; myb-related protein Myb4-like
STRING	XP_009766826.1	1e-116	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	6e-55	myb domain protein 58