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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Niben101Scf00262g02008.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | LBD | ||||||||
| Protein Properties | Length: 115aa MW: 12622.3 Da PI: 4.146 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 31.6 | 4.6e-10 | 1 | 37 | 61 | 97 |
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelall 97
+vyeA ar+rdPvyG+vg+i++lq+++ l++ l+++
Niben101Scf00262g02008.1 1 MVYEATARLRDPVYGCVGIISALQKHVFDLQSVLNEA 37
69*************************9999887765 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03195 | 1.4E-8 | 1 | 36 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 115 aa Download sequence Send to blast |
MVYEATARLR DPVYGCVGII SALQKHVFDL QSVLNEALAE AMSLRTQLSD ALSLPSLLEG 60 SPFTPENHEF LHFQKPSEQN AYTDASDALL LLPEAAGNHC PQDSEVLLPL PYLDI |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016445883.1 | 6e-68 | PREDICTED: LOB domain-containing protein 3-like | ||||
| TrEMBL | A0A1S3Y0Z4 | 1e-66 | A0A1S3Y0Z4_TOBAC; LOB domain-containing protein 3-like | ||||
| STRING | XP_009631247.1 | 2e-67 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA13147 | 14 | 19 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G07900.1 | 1e-12 | LOB domain-containing protein 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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