PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00262g04006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 251aa    MW: 28650.9 Da    PI: 4.9026
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00262g04006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.33e-21105155155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               ++++GVr+++ +grW+AeIrdp+    r kr++lg+++t+eeAa  +++a+ kl+g
  Niben101Scf00262g04006.1 105 KKFRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAATVYDEAAVKLKG 155
                               59********.**********84....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381236.7E-8911251IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000183.54E-33105163No hitNo description
SMARTSM003804.1E-37106169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-31106164IPR001471AP2/ERF domain
PfamPF008475.8E-14106155IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22106163IPR016177DNA-binding domain
PROSITE profilePS5103224.302106163IPR001471AP2/ERF domain
PRINTSPR003677.9E-10107118IPR001471AP2/ERF domain
PRINTSPR003677.9E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MIRNPVISPM DISKTVKFSQ HIVTKNKHVS EQTEKTNSQT EVSRRVVRII LTDADATDSS  60
DDEGQDIARR VKRHVTEINF MPSPNLICEK KRRLVSPDTD VTRRKKFRGV RQRPWGRWAA  120
EIRDPTRGKR VWLGTYDTPE EAATVYDEAA VKLKGPDAVT NFPKVITADI TETESVTDGG  180
EKSENDFTLS PTSVLRNDYF TPFSDLGFCE VDAFGFDVDS LFRQPEFGMS EKYYGEEFGE  240
FDFDDFALEA R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20105163160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20105163463ATERF1
3gcc_A3e-20105163463ATERF1
5wx9_A2e-191061631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190105KRRLVSPDTDVTRRKK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607079.11e-162PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
RefseqXP_016468771.11e-162PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046821e-115PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1S3ZWU71e-161A0A1S3ZWU7_TOBAC; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_009607079.11e-162(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-34cytokinin response factor 4