PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00271g04022.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 166aa    MW: 18247.7 Da    PI: 7.8022
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00271g04022.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260145.51.5e-45111101100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +Ca+Ck+lrr+C +dCv+apyfpa++p+kfanvhk+FGasnv+k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqq
  Niben101Scf00271g04022.1  11 PCAGCKLLRRRCGEDCVFAPYFPADEPHKFANVHKVFGASNVSKMLQELPEHKRGDAVSSVVYEANARVRDPVYGCVGAISSLQQ 95 
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q++ l+++la++++e
  Niben101Scf00271g04022.1  96 QIDMLRTQLAMAQAE 110
                               **********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.62510111IPR004883Lateral organ boundaries, LOB
PfamPF031959.7E-4511108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKECGKNSNS PCAGCKLLRR RCGEDCVFAP YFPADEPHKF ANVHKVFGAS NVSKMLQELP  60
EHKRGDAVSS VVYEANARVR DPVYGCVGAI SSLQQQIDML RTQLAMAQAE VVHLRLRQSA  120
GITNSPTNSG SPSSHIMGSH QPKGYFHMDL DVDQSNNGFN EPIWPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4771257125LOB family transfactor Ramosa2.1
5ly0_B1e-4771257125LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246176.11e-122PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE92e-62LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A1J6IHI21e-120A0A1J6IHI2_NICAT; Lob domain-containing protein 4
STRINGXP_009783465.11e-121(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-63LOB domain-containing protein 4