PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00272g08005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 364aa    MW: 41533.7 Da    PI: 8.6702
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00272g08005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.65.1e-4921291128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               + pGfrFhP deelv +yL++k+++k l++ e ik++diyk++PwdLpk ++ +e+e yfF++rd+ky++ +r+nr+t +g+W+a
  Niben101Scf00272g08005.1   2 MLPGFRFHPIDEELVGFYLRRKIQHKCLSI-ELIKQLDIYKFDPWDLPKLATIGEREQYFFCPRDRKYRNRTRPNRVTGAGFWNA 85 
                               579**************************9.89***************8778899****************************** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg+d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+ l
  Niben101Scf00272g08005.1  86 TGTDRPIYSSeGSKCIGLKKSLVFYKGRAAKGTKTDWMMHEFLL 129
                               *********956677**************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-532160IPR003441NAC domain
PROSITE profilePS5100553.5352160IPR003441NAC domain
PfamPF023651.9E-234127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MMLPGFRFHP IDEELVGFYL RRKIQHKCLS IELIKQLDIY KFDPWDLPKL ATIGEREQYF  60
FCPRDRKYRN RTRPNRVTGA GFWNATGTDR PIYSSEGSKC IGLKKSLVFY KGRAAKGTKT  120
DWMMHEFLLP SITDSTTSKR FLDKNMRPND SWAICRIFKK ANSNAHRALS HSWVSPQISS  180
NTTPYFQTSD HFTPNEMSFI AKSTSSAIQF SNDLQNSSMA SFSPIDIPSY RTINPMTTSN  240
RHPQQISIST HESTTSNTLS NSYTNLNIDA SSLLLNMSSS ILGDYNNFTI TLPDNIEENQ  300
IQEAGNLVKE LPNVNVDHMQ EQWGNVRSVI GFPVNTDIDA WNKSRLLWDS SPCPTEMSSS  360
YSTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-52416319168NO APICAL MERISTEM PROTEIN
1ut4_B3e-52416319168NO APICAL MERISTEM PROTEIN
1ut7_A3e-52416319168NO APICAL MERISTEM PROTEIN
1ut7_B3e-52416319168NO APICAL MERISTEM PROTEIN
3swm_A4e-52416322171NAC domain-containing protein 19
3swm_B4e-52416322171NAC domain-containing protein 19
3swm_C4e-52416322171NAC domain-containing protein 19
3swm_D4e-52416322171NAC domain-containing protein 19
3swp_A4e-52416322171NAC domain-containing protein 19
3swp_B4e-52416322171NAC domain-containing protein 19
3swp_C4e-52416322171NAC domain-containing protein 19
3swp_D4e-52416322171NAC domain-containing protein 19
4dul_A3e-52416319168NAC domain-containing protein 19
4dul_B3e-52416319168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468971.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH03e-97FEZ_ARATH; Protein FEZ
TrEMBLA0A1S3ZXF50.0A0A1S3ZXF5_TOBAC; protein FEZ-like
STRINGXP_009590031.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.16e-98NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]