PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00276g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 221aa    MW: 24801.3 Da    PI: 9.9699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00276g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.9e-094776436
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS
                       HLH  4 ahnerErrRRdriNsafeeLrellPkaskapsk 36
                              +h ++Er+RR+riN  +++L++l P+++   + 
  Niben101Scf00276g00010.1 47 THAMAERKRRERINAHLHTLKKLFPHLP---KL 76
                              8*************************73...32 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.98E-84080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-44675No hitNo description
PfamPF000101.9E-64775IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-64778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.38E-6127196No hitNo description
PROSITE profilePS516718.505128207IPR002912ACT domain
Gene3DG3DSA:3.30.70.2602.6E-7128195No hitNo description
CDDcd048730.00611130194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MLSSLQGCNG FLQRANSVQH LHQRSSNMVD EYEKSTRKNK SKDAALTHAM AERKRRERIN  60
AHLHTLKKLF PHLPKLKELR KKVAQQMETQ KDSEGNYNGL SSFFLPGEND ELLVSYYEES  120
ESDERTVKAT VCCEDRPGLN RDLSTAVRLV QGRVIKAEMA TVGGRTKAEM VVVLCKVGGG  180
EKDIGQLRRA LKAVVENRAL GLGSSLNVGR RLDDNKWTCF G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779545.11e-149PREDICTED: putative transcription factor bHLH107 isoform X1
RefseqXP_016461574.11e-149PREDICTED: putative transcription factor bHLH107
TrEMBLA0A1S3ZB471e-148A0A1S3ZB47_TOBAC; putative transcription factor bHLH107
TrEMBLA0A1U7WZA11e-148A0A1U7WZA1_NICSY; putative transcription factor bHLH107 isoform X1
STRINGXP_009779545.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137131315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.18e-11bHLH family protein