PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00282g03020.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 231aa    MW: 25958.6 Da    PI: 8.4839
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00282g03020.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.12.6e-20179229152
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                               k++l+Wt +LH++F++a++++ G ++A P+ ile+m+v+gLt+e+v+SHLQ 
  Niben101Scf00282g03020.1 179 KTKLVWTDTLHDKFLQAIREI-GLDRAYPRIILEVMDVPGLTRENVASHLQV 229
                               689******************.*****************************5 PP
2Response_reg63.88.6e-2289325109
                               EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
              Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                               +v +++++++al +l+ +   +D+i+ D+ mp+m+G+el + i++e  ++p+++++a + ++++le l++Ga  fl Kp++p++l
  Niben101Scf00282g03020.1   8 SVVTVKHARDALCILRFRGvsFDVIVSDVHMPHMNGFELQRLIAQEF-DVPVVFMSADDRDSMVLEGLERGAVFFLQKPISPDDL 91 
                               689999*********999899**********************9999.9************************************ PP

                               HH CS
              Response_reg 108 vk 109
                               ++
  Niben101Scf00282g03020.1  92 RD 93 
                               97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004485.3E-6195IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.141199IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.30E-20899No hitNo description
SuperFamilySSF521722.42E-22898IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.0E-248106No hitNo description
PfamPF000723.5E-17894IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129410.372176231IPR017930Myb domain
SuperFamilySSF466895.55E-14177231IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-20177229IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-20179231IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MNQLPPSSVV TVKHARDALC ILRFRGVSFD VIVSDVHMPH MNGFELQRLI AQEFDVPVVF  60
MSADDRDSMV LEGLERGAVF FLQKPISPDD LRDIWQYAAL AKKNKGKGKS VVIEDIQENN  120
SSSKSSSGLP KSPHENVESS SSINVEKGNK EGKKEESKKK SARKHKEAEK EDSSTPPKKT  180
KLVWTDTLHD KFLQAIREIG LDRAYPRIIL EVMDVPGLTR ENVASHLQVH F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016455294.11e-130PREDICTED: uncharacterized protein LOC107779377
TrEMBLA0A1S3YST51e-128A0A1S3YST5_TOBAC; uncharacterized protein LOC107779377
STRINGXP_009781788.11e-128(Nicotiana sylvestris)
STRINGXP_009600306.11e-128(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-36response regulator 2