PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00285g10004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 114aa    MW: 13153.1 Da    PI: 8.6838
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00285g10004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.3e-104977129
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                              +g+WT+eEd+ll ++v+++G g W++++ 
  Niben101Scf00285g10004.1 49 KGAWTEEEDLLLRRCVQMYGEGKWHKVPI 77
                              79************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.182829IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.3E-5830IPR009057Homeodomain-like
PROSITE profilePS512949.1264492IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-114478IPR009057Homeodomain-like
SuperFamilySSF466892.3E-84678IPR009057Homeodomain-like
PfamPF002491.1E-84978IPR001005SANT/Myb domain
CDDcd001673.67E-65175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MNTTIIKSSG VRKGAWTEEE DLLLRRCVEN TVKHIMNTTT ITKSSGVRKG AWTEEEDLLL  60
RRCVQMYGEG KWHKVPIRAV YEHTGGVRAV EDSLLLANHI IYGHFVYVYI VDRY
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56650.15e-15production of anthocyanin pigment 1