PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00294g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family S1Fa-like
Protein Properties Length: 125aa    MW: 14155 Da    PI: 10.3587
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00294g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA123.95.1e-393093366
                      S1FA  3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGva 66
                               + veakG+nPGlivll++ggl+l fl+gny+lyvyaqk+lPP+kkkP+skkk+kre+lkqGv+
  Niben101Scf00294g01005.1 30 ANDVEAKGFNPGLIVLLLIGGLVLAFLIGNYVLYVYAQKTLPPKKKKPLSKKKMKRERLKQGVS 93
                              6789***********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.0053194No hitNo description
PfamPF046891.3E-353393IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MNFRVERAAE HGYLPSLIGK EKKKGIKNMA NDVEAKGFNP GLIVLLLIGG LVLAFLIGNY  60
VLYVYAQKTL PPKKKKPLSK KKMKRERLKQ GVSDLESRCC MYVEVVELIS GKTIMAVKEM  120
WQELN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018623407.14e-38PREDICTED: DNA-binding protein S1FA-like
TrEMBLA0A1U7WEN52e-36A0A1U7WEN5_NICSY; DNA-binding protein S1FA-like
STRINGXP_009590376.12e-37(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249