PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00304g06001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 899aa MW: 101513 Da PI: 6.7311

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00304g06001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.3	2.5e-08	44	86	48	90
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++ +++++ +C+a+l+v+++ ++kw+vtk +eH+H+l+ Niben101Scf00304g06001.1 44 QDEVVEPQTVYGESCDAMLRVELKGQNKWVVTKYMKEHSHSLV 86 3456778888899****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-6	44	86	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-26	224	315	IPR018289	MULE transposase domain
Pfam	PF04434	2.4E-9	502	536	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.189	502	538	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-6	513	540	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence Send to blast
MDVEGIDVEQ GSMQHQGGIT DDGDDEPSES GEANVNGRSN APEQDEVVEP QTVYGESCDA 60 MLRVELKGQN KWVVTKYMKE HSHSLVHPNK VHYHTSHRHF AVAKKNGPEN NQGVGIVPSG 120 VMYVSVDGNR IPLEINRGAK STRPAESDQT IKDTVPQSFS PRQCNQRRTL GRDAQNLLNY 180 FKKMQAENPG FYYAIQLDEE NRMANVFWAD ARSRNAYSHF GDAVILDTMY RVNQCRVPFA 240 PFTGVNHHGQ TILFGCALLL DESEATFIWL FKTFLAGMND RAPVSIITDQ DTVIQSAVAQ 300 VFPGTRHCIN KWHVLRGGQD RMAHVCHMYP NFQVELYNCI NLTETVEEFE SYWETILEKY 360 DLKKNDWLKS IYNARQQWVP AYFRDTFFAA LSPNKEYECS FFDGYVNQQI TLPLFFRQYE 420 RALENSFEKE IEADFDTICT TPPLRTPSPM EKQAATLYTK KIFLKFQEEL VETFVYTANR 480 IDGDGALSTF RVAKFEDDQK AYIVSLNISE LKANCSCQMF ECSGILCRHI LTVFTVTNVL 540 TLPSHYILKR WTINAKCAAE SDEHVQLHGT ESIAQKYNSL CREAIRYAEE GAVAQETYKA 600 ALAALKEGGK KVALAKRNVA KVSPPSSQVS GVGYDDRRTS ASAPEMTPLL WPRQDEMTKR 660 FNLNDTGISA RTIADLNAQR MAPXGISART IADLNGQRMA PVSLHRDDGH ADNKVILPCL 720 KSMTWVMENK TSTPANRVAV INLKLQDYSR TPSRESEVKF QLSRVTLEPM LKSMAYISEQ 780 LSTPANRVAV INLKLLSCKE TSASAMNCLT DIESISFQLQ DTETTSGESE VKFQVSRDTL 840 AAMLRSMAYI REQLSNTVLL PPYLGGASTR PSFVSSKFAF SNYLRTWLCF KVFAHFKVQ

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence Send to blast

MDVEGIDVEQ GSMQHQGGIT DDGDDEPSES GEANVNGRSN APEQDEVVEP QTVYGESCDA  60
MLRVELKGQN KWVVTKYMKE HSHSLVHPNK VHYHTSHRHF AVAKKNGPEN NQGVGIVPSG  120
VMYVSVDGNR IPLEINRGAK STRPAESDQT IKDTVPQSFS PRQCNQRRTL GRDAQNLLNY  180
FKKMQAENPG FYYAIQLDEE NRMANVFWAD ARSRNAYSHF GDAVILDTMY RVNQCRVPFA  240
PFTGVNHHGQ TILFGCALLL DESEATFIWL FKTFLAGMND RAPVSIITDQ DTVIQSAVAQ  300
VFPGTRHCIN KWHVLRGGQD RMAHVCHMYP NFQVELYNCI NLTETVEEFE SYWETILEKY  360
DLKKNDWLKS IYNARQQWVP AYFRDTFFAA LSPNKEYECS FFDGYVNQQI TLPLFFRQYE  420
RALENSFEKE IEADFDTICT TPPLRTPSPM EKQAATLYTK KIFLKFQEEL VETFVYTANR  480
IDGDGALSTF RVAKFEDDQK AYIVSLNISE LKANCSCQMF ECSGILCRHI LTVFTVTNVL  540
TLPSHYILKR WTINAKCAAE SDEHVQLHGT ESIAQKYNSL CREAIRYAEE GAVAQETYKA  600
ALAALKEGGK KVALAKRNVA KVSPPSSQVS GVGYDDRRTS ASAPEMTPLL WPRQDEMTKR  660
FNLNDTGISA RTIADLNAQR MAPXGISART IADLNGQRMA PVSLHRDDGH ADNKVILPCL  720
KSMTWVMENK TSTPANRVAV INLKLQDYSR TPSRESEVKF QLSRVTLEPM LKSMAYISEQ  780
LSTPANRVAV INLKLLSCKE TSASAMNCLT DIESISFQLQ DTETTSGESE VKFQVSRDTL  840
AAMLRSMAYI REQLSNTVLL PPYLGGASTR PSFVSSKFAF SNYLRTWLCF KVFAHFKVQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776133.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1U7WBW6	0.0	A0A1U7WBW6_NICSY; protein FAR1-RELATED SEQUENCE 3 isoform X3
STRING	XP_009776131.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]