PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00313g06002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 66aa    MW: 7700.62 Da    PI: 7.0917
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00313g06002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like346.3e-112751126
                   G2-like  1 kprlrWtpeLHerFveaveqLGGsek 26
                              kpr rWt eLH++Fveav++L G ++
  Niben101Scf00313g06002.1 27 KPRFRWTMELHDHFVEAVNEL-GVKR 51
                              79*******************.5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-102554IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MEESSKKQKG EETSEKAVVQ SHDLNRKPRF RWTMELHDHF VEAVNELGVK RSEKNEAAVH  60
MLHDKG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765181.15e-28PREDICTED: protein PHR1-LIKE 1-like
TrEMBLA0A1J6I8G81e-27A0A1J6I8G8_NICAT; Protein phosphate starvation response 3
STRINGXP_009765181.12e-27(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120621623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.24e-08response regulator 1