PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00314g02004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 369aa    MW: 41240.9 Da    PI: 5.5987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00314g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.4e-05212258555
                               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               + ++   RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Niben101Scf00314g02004.1 212 NAKNTNVRREKIGERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 258
                               5566667******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.15207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0073212263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-12217277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-12218276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.26E-6219262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDKQNMFLNN VNTTNELNYF YNPSWENSSM DHQNDPFESA LSSIVSSPVT SNIMPSNSSG  60
DNFVLRELIG KLGNICNSGE ISPNSYVNST NNSCYTTLNS PPRLNLSNFD HQINGNLQLY  120
DVNHLPNSTN LAHFSVDSEF VNRNVPNLES GKLSRVSSSK CINVSGSQLG VQESEFGESM  180
ENSSVSEQIP LGNDANSKKR KSAPKKKAKE TNAKNTNVRR EKIGERMKFL QDLVPGCNKV  240
TGKAVMLDEI INYVQSLQCQ VEFLSMKLSN MNPRMDFNTE SLLSKNMFQS AESLHHNMHP  300
SETSAAFPCE FQSQQCSNGY MARNINIMQL PHMEEFVEQT SQVPTFFGDE LHSVIQMGFG  360
QIQPQNFPG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209PKKKAKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257446.10.0PREDICTED: transcription factor bHLH78-like
TrEMBLA0A1J6HVH50.0A0A1J6HVH5_NICAT; Transcription factor bhlh62
STRINGXP_009760399.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.16e-51bHLH family protein