PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00317g04016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 433aa    MW: 48918.6 Da    PI: 6.2671
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00317g04016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000451638123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              + C  C++ F++   L  H+r+H
  Niben101Scf00317g04016.1 16 HYCRVCKRGFNSAGALGGHMRSH 38
                              68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-51538IPR007087Zinc finger, C2H2
SMARTSM003550.0261638IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.12E-71638No hitNo description
PROSITE profilePS501579.2451638IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SuperFamilySSF576672.12E-7183210No hitNo description
SMARTSM003550.074188210IPR015880Zinc finger, C2H2-like
PfamPF139125.9E-8188212IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138188215IPR007087Zinc finger, C2H2
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SuperFamilySSF576674.98E-5268295No hitNo description
PfamPF139126.3E-12270294IPR007087Zinc finger, C2H2
SMARTSM003550.31271293IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286271293IPR007087Zinc finger, C2H2
PROSITE patternPS000280273293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MVDNSEKNET ISSVVHYCRV CKRGFNSAGA LGGHMRSHGV GDTNINYGEE ISEHRFMINN  60
FRRDNNKQEG QKHSYNLRAN SNRLFGNRAS EDRDRKSSMW PPNDRGKYVV DETLTLSPVS  120
SDVERNVLSY NAQSEYYGHD KDQYDSREED EDEDLANCLV MLSNKSYDLS DNNKEAKNNA  180
KEVEKGLFQC KACNKIFNSH QALGGHRASH KKVKGCYAAK LDDNNNNNND TEIDEDSISP  240
TDLILHQESN SFQSHSPSSS GSFSRKRSRV HQCSICHRVF TSGQALGGHK RCHWLTSSLP  300
ETTFIPNFQE IQYQNQEQLF NKPIFTNSDQ PLDLNFPAQL GNAAEVGHKL HNPFEYEGPR  360
SYLQLWTDQE VDTNNLNLSL NQKSKVSTED LSREENCKAK EAKLSNLKDL NLDGGSSWLQ  420
VGIGPTPDIV ATL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780218.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A1U7WNQ40.0A0A1U7WNQ4_NICSY; zinc finger protein ZAT9
STRINGXP_009780218.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.19e-24C2H2-like zinc finger protein