PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00317g11002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 618aa    MW: 68632.6 Da    PI: 6.0915
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00317g11002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS262.81.2e-802426023374
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               ++++++ e + +g++++aq +Larl+++ sp g+p++R a+yf+eAL    +   + ++ ++pp+  ++ + + ++ a+k+fse+
  Niben101Scf00317g11002.1 242 DQIFQASELLLAGQFSNAQMILARLNQQLSPIGKPFKRSAFYFKEALLLPFLL--PCTSTSFPPRIPTPFDCVLKMDAYKAFSEI 324
                               67899999999************************************998887..7777889***99999*************** PP

                      GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                               sP+++f ++t  q Ilea+  ++++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+  ++e  + fA+ +
  Niben101Scf00317g11002.1 325 SPLIQFMNFTSYQPILEALGDSKEIHIIDFDIGCGAQWSSFMQELRSSNRKATSLKITAFVSPSTHHSVEIGIMHESVTLFANDV 409
                               ************************************************************************************* PP

                      GRAS 173 gvpfefnvlvakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                               g+ fe +v+  ++++  +  l++Lr ++ Ea+a+n+ +   +      +     +++L+++k+lsPkvvv  e+ +++++ ++ +
  Niben101Scf00317g11002.1 410 GIGFELEVINLDSFDpkTYPLSSLRSSECEAIAINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERTELPLKH 488
                               ********9777654115678999************99555444..344....456***************************** PP

                      GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                               ++l+al+yy  l+ s++a    + e  +k+Er ll+++i+n+v  + ++      ++  Wr+ + +aGF+p+++s+ a+ qa+++
  Niben101Scf00317g11002.1 489 HLLHALQYYEILLASIDAA-NLTPEIGKKIERSLLQPSIENMVLGRLRS----PDQMPPWRNLFASAGFSPIEFSNMAEIQAECV 568
                               ****************555.34778999****************99988....999***************************** PP

                      GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               + ++++ g++ve+++ slvl+Wk+++L+s+ aWr
  Niben101Scf00317g11002.1 569 VMRTQVGGFHVEKRQTSLVLCWKQQKLLSILAWR 602
                               *********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.12214582IPR005202Transcription factor GRAS
PfamPF035144.1E-78242602IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MGEKSDLGFE DLDNLLPELA GSDQTLFRCI SGDMEDPSVS LKQLLQGGNE NADLGCGVSV  60
QSSGFEVSAA GSLAHTDNVS FSNSNLLLNA NIEKIGSVIN SDNKKNVSFE HLNVNLLARN  120
LAPALSFQEQ QSEHNSAYVN MLGSLWYDIS QEQPPPKRHN SGTLGSSLSA LLPEVPFFDS  180
SGDLLLRKQP LGQMRQQVNL LPFHQFQQKP LIVPKLEAAG GGGNGNLMVP RHQQQEQQFI  240
YDQIFQASEL LLAGQFSNAQ MILARLNQQL SPIGKPFKRS AFYFKEALLL PFLLPCTSTS  300
FPPRIPTPFD CVLKMDAYKA FSEISPLIQF MNFTSYQPIL EALGDSKEIH IIDFDIGCGA  360
QWSSFMQELR SSNRKATSLK ITAFVSPSTH HSVEIGIMHE SVTLFANDVG IGFELEVINL  420
DSFDPKTYPL SSLRSSECEA IAINFPIWSI SSCLFAFPSL LHCMKQLSPK VVVSLERGCE  480
RTELPLKHHL LHALQYYEIL LASIDAANLT PEIGKKIERS LLQPSIENMV LGRLRSPDQM  540
PPWRNLFASA GFSPIEFSNM AEIQAECVVM RTQVGGFHVE KRQTSLVLCW KQQKLLSILA  600
WRPAEDQIKR LKPHLGSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2523360312380Protein SCARECROW
5b3h_A2e-2523360311379Protein SCARECROW
5b3h_D2e-2523360311379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016437509.10.0PREDICTED: scarecrow-like protein 6 isoform X1
TrEMBLA0A1S3XCF70.0A0A1S3XCF7_TOBAC; scarecrow-like protein 6 isoform X1
STRINGXP_009803484.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69861931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-93GRAS family protein