PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00317g11013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 713aa MW: 78202.9 Da PI: 5.9324

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00317g11013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	273.4	7.3e-84	352	712	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 ++++++ e + +g++++aq +Larl+++ sp g+p++R+a+yf+eAL+ + ++++ ++pp+ ++ + + ++ a+k+fsev Niben101Scf00317g11013.1 352 DQIFQASELLLAGHFSNAQMILARLNQQLSPIGKPFKRAAFYFKEALQLPFLL--PRTSTSFPPRIPTPFDCVLKMDAYKAFSEV 434 57899999999***********************************99987..99999********************* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 sP+++f ++t NqaI ea+ ++++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+ ++e L+ fA+ l Niben101Scf00317g11013.1 435 SPLIQFMNFTSNQAIFEALGDAKEIHIIDFDIGCGAQWSSFMQELPSSNRKATSLKITAFVSPSTHHSVEIGIMHESLTLFANDL 519 ********************************************************************************* PP GRAS 173 gvpfefnvlvakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 g++fe +v+ ++++ + l++Lr ++ Ea+a+n+ + + + +++L+++k+lsPkvvv e+ +++++ ++ + Niben101Scf00317g11013.1 520 GIRFELEVINLDSFDpkTYPLSSLRSSECEAIAINFPIWSISSC--LFA----FPSLLHCMKQLSPKVVVSLERGCERTELPLKH 598 ****9777654115678999********99555444..344....456************************* PP GRAS 256 rflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 ++l+al+yy +l+ s+ +a+l + + k+Er ll+ +i+n+v + ++ ++ Wr+ + +aGF+p+++s+ ++ qa+ Niben101Scf00317g11013.1 599 HLLHALQYYETLLASIdAANL--TPDVGEKIERSLLQSSIENMVLGRLQS----PNRIPPWRNLFASAGFSPIAFSNLTEIQAEI 677 ************55555..6678889**********988777....999************************ PP GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l++++++ g++ve+++ slvl Wk+++L+s+ +Wr Niben101Scf00317g11013.1 678 LVKRTQVGGFHVEKRQTSLVLSWKQQELLSALSWR 712 ********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.466	324	692	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-81	352	712	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MIVIPQNNNL AGAKGVLGVS SYVPSISSPE AAICNKGLNF TRNESVSVLD TRSPSPSASS 60 SSCSYGGQYA GNNGVPGAGA EKIDGRKEEL VTELQPFSFG LEPEKFNLGF GDLDNLLPEL 120 AGSDQTIFRW ISGDMEDPSV SLKQLIQGGN ANADLGCGVS VAGSFACTDN ISFSSSDISL 180 DANIEKIGSV VIDSNNRPNN NFENPNVSLL AKSLPPSLSF QEQQSEQKPQ ISCPQIMANQ 240 TQFQNSAYVN LFGSSSYNMN QEQPPPKRHN SGILGSSLGF LLPKVPFFNP SGDLLLRKQP 300 LGQIQQQVNL LPPHQFQPTP LFVPKLEAAA GGGNGNVMVP RHQQQEQQFI YDQIFQASEL 360 LLAGHFSNAQ MILARLNQQL SPIGKPFKRA AFYFKEALQL PFLLPRTSTS FPPRIPTPFD 420 CVLKMDAYKA FSEVSPLIQF MNFTSNQAIF EALGDAKEIH IIDFDIGCGA QWSSFMQELP 480 SSNRKATSLK ITAFVSPSTH HSVEIGIMHE SLTLFANDLG IRFELEVINL DSFDPKTYPL 540 SSLRSSECEA IAINFPIWSI SSCLFAFPSL LHCMKQLSPK VVVSLERGCE RTELPLKHHL 600 LHALQYYETL LASIDAANLT PDVGEKIERS LLQSSIENMV LGRLQSPNRI PPWRNLFASA 660 GFSPIAFSNL TEIQAEILVK RTQVGGFHVE KRQTSLVLSW KQQELLSALS WRC

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MIVIPQNNNL AGAKGVLGVS SYVPSISSPE AAICNKGLNF TRNESVSVLD TRSPSPSASS  60
SSCSYGGQYA GNNGVPGAGA EKIDGRKEEL VTELQPFSFG LEPEKFNLGF GDLDNLLPEL  120
AGSDQTIFRW ISGDMEDPSV SLKQLIQGGN ANADLGCGVS VAGSFACTDN ISFSSSDISL  180
DANIEKIGSV VIDSNNRPNN NFENPNVSLL AKSLPPSLSF QEQQSEQKPQ ISCPQIMANQ  240
TQFQNSAYVN LFGSSSYNMN QEQPPPKRHN SGILGSSLGF LLPKVPFFNP SGDLLLRKQP  300
LGQIQQQVNL LPPHQFQPTP LFVPKLEAAA GGGNGNVMVP RHQQQEQQFI YDQIFQASEL  360
LLAGHFSNAQ MILARLNQQL SPIGKPFKRA AFYFKEALQL PFLLPRTSTS FPPRIPTPFD  420
CVLKMDAYKA FSEVSPLIQF MNFTSNQAIF EALGDAKEIH IIDFDIGCGA QWSSFMQELP  480
SSNRKATSLK ITAFVSPSTH HSVEIGIMHE SLTLFANDLG IRFELEVINL DSFDPKTYPL  540
SSLRSSECEA IAINFPIWSI SSCLFAFPSL LHCMKQLSPK VVVSLERGCE RTELPLKHHL  600
LHALQYYETL LASIDAANLT PDVGEKIERS LLQSSIENMV LGRLQSPNRI PPWRNLFASA  660
GFSPIAFSNL TEIQAEILVK RTQVGGFHVE KRQTSLVLSW KQQELLSALS WRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-26	373	712	26	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019252370.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A1J6IGI6	0.0	A0A1J6IGI6_NICAT; Scarecrow-like protein 6
STRING	XP_009803487.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6986	19	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	7e-94	GRAS family protein