PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00320g02010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 229aa    MW: 26682.1 Da    PI: 6.5251
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00320g02010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.68.3e-09311338128
                       NAM  38 diykvePwdLpk...kvkaeekew......yfFskrdkkyatgkrknra..tksgyWkatgkdkevlsk......kgel..vglk 103
                               d+yk ePw   +   ++ + +++w      yf ++r+k+   + r +r+   + g+Wk++ k k+v+ k      +  +  +g  
  Niben101Scf00320g02010.1   3 DVYKQEPWVTYShghSTGGADDNWdtsiyrYFITPRKKN---KGRFRRTvgERGGTWKQQDKGKAVTIKscnerkR--DliIGRM 82 
                               89999**99863344222333444445533455544443...456677412469********99999987765433..156**** PP

                       NAM 104 ktLvfykgrapkge......ktdWvmheyrl 128
                               k++ + ++++ k          +W+m+ey l
  Niben101Scf00320g02010.1  83 KSMCYTEKNNTKCInsdeynDGKWLMKEYVL 113
                               ******65544433222222789******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.861137IPR003441NAC domain
SuperFamilySSF1019413.79E-113135IPR003441NAC domain
PfamPF023656.2E-79113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MYDVYKQEPW VTYSHGHSTG GADDNWDTSI YRYFITPRKK NKGRFRRTVG ERGGTWKQQD  60
KGKAVTIKSC NERKRDLIIG RMKSMCYTEK NNTKCINSDE YNDGKWLMKE YVLSDPILNK  120
FSNSERKDYV ICAIKKLPKR STTCNISQTS NVTTTMESCS EQEKVDTYMN NYVVVQPLMD  180
QDYFFDQAII ESVESLMVET EVIVGINSVK NQEYNEAITP IYYVEESEV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622624.11e-140PREDICTED: uncharacterized protein LOC104113990
TrEMBLA0A1J6IJZ51e-145A0A1J6IJZ5_NICAT; Uncharacterized protein
STRINGXP_009622624.11e-139(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1500848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.14e-07NAC domain containing protein 57