PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00337g02001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 139aa MW: 15797.3 Da PI: 10.3166

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00337g02001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.4	2.4e-36	66	126	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +a+kcprCds ntkfCyynny+l qPr+fC++ rryWtkGG lrnvPvGgg+rknk+s+ Niben101Scf00337g02001.1 66 QPQAVKCPRCDSLNTKFCYYNNYNLCQPRHFCQSRRRYWTKGGILRNVPVGGGCRKNKRSK 126 56899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-24	64	124	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-30	68	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.41	70	124	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MEEAAIPSQI PKSANIEPCL KIHRKNCTSN FLRSILSKIC KIYIQLEVAE GGFTAVGGDR 60 RLRLNQPQAV KCPRCDSLNT KFCYYNNYNL CQPRHFCQSR RRYWTKGGIL RNVPVGGGCR 120 KNKRSKPKRS AVSTNDDTC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	128	KRSKPKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019224676.1	1e-48	PREDICTED: dof zinc finger protein DOF5.4-like
Swissprot	Q8LDR0	7e-35	DOF54_ARATH; Dof zinc finger protein DOF5.4
TrEMBL	A0A314KV90	2e-47	A0A314KV90_NICAT; Dof zinc finger protein dof5.4
STRING	XP_009786397.1	5e-44	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-37	OBF binding protein 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu P,Chen H,Ying L,Cai W AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana. Sci Rep, 2016. 6: p. 27705 [PMID:27297966] Ramirez-Parra E, et al. The transcription factor OBP4 controls root growth and promotes callus formation. New Phytol., 2017. 213(4): p. 1787-1801 [PMID:27859363] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701]