PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00343g07001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 277aa MW: 30179.8 Da PI: 6.5195

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00343g07001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.3	1.8e-33	11	65	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQk+Rl Niben101Scf00343g07001.1 11 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKFRL 65 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.492	8	68	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-17	10	65	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-31	10	66	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-25	11	66	IPR006447	Myb domain, plants
Pfam	PF00249	8.3E-9	13	63	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-10	101	134	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MEPINPSLAG KQRLRWTHEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG LTIYHVKSHL 60 QKFRLAKYLP DSSSDGKNSD KKESEDMLSS LDGSSAGVQI NEALKLQMEV QRQLQLRIEA 120 QGKYLKKIIE EQQRLTGALS EVPVSGVTPP AGENGPESDN RTDPGTPAPT SESPLVDKPV 180 QEHATTKSLS INQSFSSQHE PLTPDSGCHE TSPINSPKGE RSSKKQRVGA FTKADTLLPH 240 QILESSLSSQ YQQPNPVVFL ASDQFNLSSG LSLGIED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776486.1	1e-179	PREDICTED: myb family transcription factor APL-like
Refseq	XP_009776487.1	1e-179	PREDICTED: myb family transcription factor APL-like
Refseq	XP_009776488.1	1e-179	PREDICTED: myb family transcription factor APL-like
Refseq	XP_009776490.1	1e-179	PREDICTED: myb family transcription factor APL-like
Swissprot	Q9SJW0	1e-106	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1U7WCW5	1e-177	A0A1U7WCW5_NICSY; myb family transcription factor APL-like
STRING	XP_009776486.1	1e-178	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-97	G2-like family protein