PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00366g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 141aa    MW: 15669.9 Da    PI: 10.7895
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00366g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP57.63.5e-1828105278
                               -SSTT-----TT-..-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                       SBP   2 CqvegCeadlsea..keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                               C v+gC+adls+a   +     k  +   + p+  +  l++  C  C rf ++ efD++krsCr+rL++hn+rrrk+q+
  Niben101Scf00366g00008.1  28 CLVDGCNADLSQAnaESITAAIKFVRSIQRLPKSPLGRLSRSDCSFC-RFLSFVEFDDGKRSCRKRLDGHNRRRRKPQP 105
                               **********9872245678889999999***************999.9***************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.7E-52390IPR004333Transcription factor, SBP-box
PROSITE profilePS5114116.26425103IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-1426107IPR004333Transcription factor, SBP-box
PfamPF031102.6E-728102IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MESSSSSSSS SSSKRAKASG NIVQVAHCLV DGCNADLSQA NAESITAAIK FVRSIQRLPK  60
SPLGRLSRSD CSFCRFLSFV EFDDGKRSCR KRLDGHNRRR RKPQPDLWPK LLDYILLSSK  120
GRNFCHLAVN KSFQVQLHGL A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
185102KRSCRKRLDGHNRRRRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764314.12e-28PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_009764315.12e-28PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_009764316.12e-28PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_009764317.12e-28PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_016482449.11e-28PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_016482450.11e-28PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_016482451.11e-28PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_016482452.11e-28PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_016482453.11e-28PREDICTED: squamosa promoter-binding-like protein 16
TrEMBLA0A1S4B0J63e-27A0A1S4B0J6_TOBAC; squamosa promoter-binding-like protein 16
TrEMBLA0A1U7VPP04e-27A0A1U7VPP0_NICSY; squamosa promoter-binding-like protein 16
TrEMBLA0A240EUR03e-27A0A240EUR0_TOBAC; Squamosa promter-binding-like protein 6
STRINGXP_009764314.16e-28(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-17SBP family protein