PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00372g03026.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 138aa MW: 16352.1 Da PI: 10.6215

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00372g03026.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.9	2.7e-11	41	117	10	89
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 + ++++l++p + +++++++ + + ++d++gr++e +++++k + r++l+kGW++ ++ n ++ D ++ ++++ + Niben101Scf00372g03026.1 41 AKRRDQLYVPVDVVRDYNLE--LPPRMFFRDSEGRKFETEVNIWKDG-RIWLKKGWRKICRWNVVEKEDRCICEFMRGKA 117 567899*********666..5567***********999985.89*****************99999876533 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.9E-17	28	123	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-17	28	123	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.277	32	129	IPR003340	B3 DNA binding domain
CDD	cd10017	3.01E-8	33	125	No hit	No description
SMART	SM01019	0.0013	35	126	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-9	42	115	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
VVKRATMIKK RDVPDQYAVE IFRSGRATQP KNPYFVAKIR AKRRDQLYVP VDVVRDYNLE 60 LPPRMFFRDS EGRKFETEVN IWKDGRIWLK KGWRKICRWN VVEKEDRCIC EFMRGKANEV 120 LYLQVTVVKA GGVSNPSK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769341.1	3e-91	PREDICTED: B3 domain-containing protein REM20-like isoform X2
Refseq	XP_019252155.1	6e-91	PREDICTED: B3 domain-containing protein At4g34400-like
TrEMBL	A0A1J6J8N3	1e-89	A0A1J6J8N3_NICAT; Putative b3 domain-containing protein
TrEMBL	A0A1U7VWL5	6e-90	A0A1U7VWL5_NICSY; B3 domain-containing protein REM20-like isoform X2
STRING	XP_009769340.1	4e-90	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1091	22	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60140.1	4e-15	B3 family protein