PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00383g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 371aa MW: 40361.2 Da PI: 7.2823

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00383g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	207.6	3.2e-64	115	297	3	155
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsals 87 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql++++++++++++++++ r+ + s+ q++++ Niben101Scf00383g00001.1 115 GGGISCQDCGNQAKKDCEHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTTLQQQQEEQKQQQQQTRQLQXLSTLQQQQE 199 5789***************************************************9999988877777776666555554444 PP DUF702 88 stklssaeskkeletss..............................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhv 142 +++ +++++++ ++ +P++vss+avf+cvr+ssvdd e+++aYqtav+igGhv Niben101Scf00383g00001.1 200 EQQQPQQQTRQLHIDNNpkrqredpsssslvctrilpsstsglevgnFPAKVSSTAVFHCVRMSSVDDVEDQFAYQTAVNIGGHV 284 44444444333322222566667777899**************************************************** PP DUF702 143 fkGiLydqGleek 155 fkGiLydqG+e++ Niben101Scf00383g00001.1 285 FKGILYDQGPENQ 297 ********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.2E-61	117	295	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.0E-27	119	161	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.3E-26	247	294	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MAGFFSLGGG AASSSQAQDQ QHQQSTNNPP TEISPESWFL YRNDQELPTY RGFELWQTSN 60 SQPQIRHPIN PLQDLYPTAA VGLGVGPSRS GFTMTAARPD HDPSSGGLVM MRSGGGGISC 120 QDCGNQAKKD CEHMRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLTT LQQQQEEQKQ 180 QQQQTRQLQX LSTLQQQQEE QQQPQQQTRQ LHIDNNPKRQ REDPSSSSLV CTRILPSSTS 240 GLEVGNFPAK VSSTAVFHCV RMSSVDDVED QFAYQTAVNI GGHVFKGILY DQGPENQYMA 300 AGESSSAGGS ASHHHNLIGA AGTATSAATT SASGRGAAAP PEASPYLDPS LYPAPINTFM 360 AGTQFFPPPR S

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MAGFFSLGGG AASSSQAQDQ QHQQSTNNPP TEISPESWFL YRNDQELPTY RGFELWQTSN  60
SQPQIRHPIN PLQDLYPTAA VGLGVGPSRS GFTMTAARPD HDPSSGGLVM MRSGGGGISC  120
QDCGNQAKKD CEHMRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLTT LQQQQEEQKQ  180
QQQQTRQLQX LSTLQQQQEE QQQPQQQTRQ LHIDNNPKRQ REDPSSSSLV CTRILPSSTS  240
GLEVGNFPAK VSSTAVFHCV RMSSVDDVED QFAYQTAVNI GGHVFKGILY DQGPENQYMA  300
AGESSSAGGS ASHHHNLIGA AGTATSAATT SASGRGAAAP PEASPYLDPS LYPAPINTFM  360
AGTQFFPPPR S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763993.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Refseq	XP_016436970.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	1e-125	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S3XAL2	0.0	A0A1S3XAL2_TOBAC; protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A1U7VCB3	0.0	A0A1U7VCB3_NICSY; protein SHI RELATED SEQUENCE 1-like
STRING	XP_009763993.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	4e-67	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]