PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00383g03006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 369aa MW: 41770 Da PI: 8.4205

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00383g03006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.5e-05	272	310	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L +l+ + +K + a++L++A+ YI+ Lq Niben101Scf00383g03006.1 272 RKEKLGDRISALHRLVAPF-----GKTDTASVLTEAIGYIQFLQ 310 6778889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.414	260	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.70E-5	270	313	No hit	No description
SuperFamily	SSF47459	5.5E-10	270	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-7	270	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MDSRNLYHHY QLQQQQFAGY PLLTGVPALP DWNPSLISEE EYYYKGDMKR IQNNISSEEL 60 WKRSSSIDTF PLMNSSMFQD CHQSSNEQLD YKNSKAYISN DYFLKMKDMN GLSNSLFKES 120 YFKQEQQHVF DLNENLLSED HSYMNNAKTC TGFSGLAAAA TPNYISNHME HYDFPGLKKL 180 AYNGLNFKNN IGDHSTKFGH FTTERMPSDF NGLQELTHSP SNSSNKKKVV GNNIGVSTKA 240 KRLNCSAENP AQEASKKPRI TSQSSTPMLK VRKEKLGDRI SALHRLVAPF GKTDTASVLT 300 EAIGYIQFLQ DQILTLSMPY TKSSQGKLPH INLKDSSIDM KGQTVQDLKS RGLCLMPMSF 360 SSYITNSCD

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MDSRNLYHHY QLQQQQFAGY PLLTGVPALP DWNPSLISEE EYYYKGDMKR IQNNISSEEL  60
WKRSSSIDTF PLMNSSMFQD CHQSSNEQLD YKNSKAYISN DYFLKMKDMN GLSNSLFKES  120
YFKQEQQHVF DLNENLLSED HSYMNNAKTC TGFSGLAAAA TPNYISNHME HYDFPGLKKL  180
AYNGLNFKNN IGDHSTKFGH FTTERMPSDF NGLQELTHSP SNSSNKKKVV GNNIGVSTKA  240
KRLNCSAENP AQEASKKPRI TSQSSTPMLK VRKEKLGDRI SALHRLVAPF GKTDTASVLT  300
EAIGYIQFLQ DQILTLSMPY TKSSQGKLPH INLKDSSIDM KGQTVQDLKS RGLCLMPMSF  360
SSYITNSCD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798858.1	0.0	PREDICTED: transcription factor bHLH110-like
Refseq	XP_016489750.1	0.0	PREDICTED: transcription factor bHLH110-like
TrEMBL	A0A1S4BLL7	0.0	A0A1S4BLL7_TOBAC; transcription factor bHLH110-like
TrEMBL	A0A1U7Y6V8	0.0	A0A1U7Y6V8_NICSY; transcription factor bHLH110-like
STRING	XP_009798858.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13443	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-35	bHLH family protein