PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00414g05014.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 229aa MW: 25953.4 Da PI: 4.6118

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00414g05014.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	43.9	3.1e-14	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ri ++s r+ + +R + ++KKAeE S+LCd+eva+iifs+ Niben101Scf00414g05014.1 10 RICSESVRNSILKRRAASLFKKAEEFSILCDVEVAIIIFSE 50 67778888888888999**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.1E-11	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.867	1	50	IPR002100	Transcription factor, MADS-box
CDD	cd00120	7.55E-14	2	60	No hit	No description
PRINTS	PR00404	4.9E-5	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.71E-15	3	90	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.5E-14	10	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-5	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-5	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MARKKLRHSR ICSESVRNSI LKRRAASLFK KAEEFSILCD VEVAIIIFSE GEIQPIAYPS 60 IGQAKEILMS FSEAERLKKL VKHETYLLEK VNEQEEKIGK VEKMNEGKEM DILFNQLVEG 120 KNINELDARQ LKGLLNLSAA KMDKLNERKK QVIQPSESPY CPSDFKLLGE NVANQTIDLM 180 EDLINDPWFV ESMSTNQNEF GTDEFGTEPA LEEGNDNNAG DDGNPKDLN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009794692.1	1e-151	PREDICTED: MADS-box protein AGL24-like
Refseq	XP_016468130.1	1e-151	PREDICTED: MADS-box protein AGL71-like
TrEMBL	A0A1S3ZUN3	1e-149	A0A1S3ZUN3_TOBAC; MADS-box protein AGL71-like
TrEMBL	A0A1U7XRI7	1e-149	A0A1U7XRI7_NICSY; MADS-box protein AGL24-like
STRING	XP_009794692.1	1e-150	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06500.1	5e-18	AGAMOUS-like 96