PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00415g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 293aa    MW: 31740.8 Da    PI: 5.1741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00415g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-10142186554
                               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               h+++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  Niben101Scf00415g00003.1 142 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 186
                               99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.57E-11135191No hitNo description
SuperFamilySSF474598.24E-16135197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.323137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-16139197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7142186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MATNQPEGYA DDFIEQILAI PSYAGLPPVA DVGTSSETTS FTSASAAAAG IQQSLFPLGL  60
SLDNGRDDVS DAGAYAVKHE REGINIGNLY AGLEHLQSHA VRHAVPPPFQ GQPTTSTTVT  120
VPHPPAIRPR VRARRGQATD PHSIAERLRR ERISERIKAL QELVPSCNKT DRAAMLDEIL  180
DYVKFLRLQV KVLSMSRLGG ASAVAQLVAD IPLQSMEGDS AESRSNQHIW EKWSNVDTEQ  240
EVAKLMEEDV GAAMQYLQSK SLCIMPISLA ALIYPTHQPD DPSMVKPEPA APS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456702.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227683e-80UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1S3YXY20.0A0A1S3YXY2_TOBAC; transcription factor UNE12-like
STRINGXP_009612697.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.22e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]