PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00415g03019.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 226aa MW: 25914.3 Da PI: 5.1041

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00415g03019.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.3e-09	76	123	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr RR+++N++f+eL ++l + + K +K++iL A++ +++L Niben101Scf00415g03019.1 76 SKACRERLRREKLNERFSELCSVLEPG---RPVKTDKMAILGDAIRVLNEL 123 6789********************8...89************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.8E-13	64	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.42E-7	70	126	No hit	No description
PROSITE profile	PS50888	13.179	72	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-7	76	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-8	78	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-11	79	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MDQLDSFRDN SWDLIDINSF IDEAPSDFFW NSQIQNQRAV AELEAPLSSA TFQEECIETG 60 CPRKRGRNES CSKQGSKACR ERLRREKLNE RFSELCSVLE PGRPVKTDKM AILGDAIRVL 120 NELKTESEEY KEMNQKLMEE IKTLKAEKNE LREEKLALKA DKERMEQELK ATPTPASFIP 180 PHPAAYQLAV NKMAVFPSYG YVPMWQYLPP SSRDTSQDHA LRPPAA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00102	PBM	Transfer from AT4G14410	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609911.1	1e-160	PREDICTED: transcription factor bHLH104-like
Refseq	XP_009775135.1	1e-160	PREDICTED: transcription factor bHLH104 isoform X1
Refseq	XP_016457771.1	1e-160	PREDICTED: transcription factor bHLH104-like isoform X1
Refseq	XP_016461836.1	1e-160	PREDICTED: transcription factor bHLH104-like
Swissprot	Q8L467	8e-73	BH104_ARATH; Transcription factor bHLH104
TrEMBL	A0A1S3YZM2	1e-159	A0A1S3YZM2_TOBAC; transcription factor bHLH104-like isoform X1
TrEMBL	A0A1S3ZBQ1	1e-159	A0A1S3ZBQ1_TOBAC; transcription factor bHLH104-like
TrEMBL	A0A1U7WLJ4	1e-159	A0A1U7WLJ4_NICSY; transcription factor bHLH104 isoform X1
STRING	XP_009775135.1	1e-160	(Nicotiana sylvestris)
STRING	XP_009609911.1	1e-160	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4762	21	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14410.2	1e-64	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Wang C,Yao X,Yu D,Liang G Fe-deficiency-induced expression of bHLH104 enhances Fe-deficiency tolerance of Arabidopsis thaliana. Planta, 2017. 246(3): p. 421-431 [PMID:28451750] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Min JH, et al. A basic helix-loop-helix 104 (bHLH104) protein functions as a transcriptional repressor for glucose and abscisic acid signaling in Arabidopsis. Plant Physiol. Biochem., 2019. 136: p. 34-42 [PMID:30639920]