PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00416g07001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 519aa    MW: 56478.8 Da    PI: 8.0426
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00416g07001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.3e-11159183226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               +++ C ++++t tCk+Gd+CkF H+
  Niben101Scf00416g07001.1 159 GEKDCAHYMQTRTCKFGDSCKFDHP 183
                               7889********************8 PP
2zf-CCCH36.96.1e-12208234127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C++f++t  Ck+G+rCkF+H++
  Niben101Scf00416g07001.1 208 PGEPDCPYFMKTQKCKFGNRCKFNHPK 234
                               5789*********************96 PP
3zf-CCCH36.67.7e-12257281327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C f+++tG Ck+G++CkF+H++
  Niben101Scf00416g07001.1 257 EPSCAFYMKTGACKFGATCKFHHPR 281
                               577********************96 PP
4zf-CCCH37.24.8e-12331357127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C+f+++tG CkyG++C+++H++
  Niben101Scf00416g07001.1 331 PGEVDCPFYLKTGSCKYGGTCRYNHPE 357
                               57899********************96 PP
5zf-CCCH41.32.5e-13412434426
                               ---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                +C+f+++tG+Ck+G+rCkF+H+
  Niben101Scf00416g07001.1 412 LECDFYMKTGECKFGERCKFHHP 434
                               58********************9 PP
6zf-CCCH37.44.2e-12468489627
                               -SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                               C+++++tG CkyG++CkF H+p
  Niben101Scf00416g07001.1 468 CPYYMKTGMCKYGATCKFDHPP 489
                               ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.742157185IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013157184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5159184IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9159183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4163182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915207235IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-6207234IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9209234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6212236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4213234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295254282IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5254281IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9257281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6258282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4260281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112330358IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-7330357IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9332357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5334358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-4336357IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859408436IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6408435IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6411437IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10413434IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5414434IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319462490IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6462489IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6466489IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5468487IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8468489IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MANQLYGYNP SSNAGIAAGS NLSRTTTRSM DDYLSTDNNK PFLGSSSYFG SSGYSFSSPT  60
MLFNQSDSYN PAASKIPGLA AYQSSWTAPP GVDVAQPPAA DSYFSSLKRS SSDALYHRTL  120
LGARNTIGQA EAWFSANPLA KRPRFESASN LSVYPQRPGE KDCAHYMQTR TCKFGDSCKF  180
DHPIWVPEGG IPDWKEVPVI TESLPERPGE PDCPYFMKTQ KCKFGNRCKF NHPKDNTAQL  240
GSVQNCDVSV LPERPSEPSC AFYMKTGACK FGATCKFHHP RDIQLPSPKQ ESGSAEIPGS  300
ANNGMTEDVN LIKPLSVPAL LHNSKGLPIR PGEVDCPFYL KTGSCKYGGT CRYNHPERTA  360
AIGPALVASP ASHLNIGMVN PAASLLQNLD PRLTQTMLGL LPPVYPQRPG QLECDFYMKT  420
GECKFGERCK FHHPLDRSAP VVSAKDVQQP NVKLTLAGLP RREGAVHCPY YMKTGMCKYG  480
ATCKFDHPPP GEVLGMATSQ GASLSVEGED TVDVKEQQQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782011.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1U7WXI10.0A0A1U7WXI1_NICSY; zinc finger CCCH domain-containing protein 37 isoform X1
STRINGXP_009782011.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)