PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00428g03010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 119aa MW: 13303.2 Da PI: 7.1747

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00428g03010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.8	1e-44	11	108	2	99
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+++l+yeAear+rdPvyG+vg i+ lq+q Niben101Scf00428g03010.1 11 CAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNTLAYEAEARVRDPVYGCVGAITFLQRQ 95 *********************************************************************************** PP DUF260 87 leqlkaelallke 99 +e+l++el+++++ Niben101Scf00428g03010.1 96 VERLEKELDAANA 108 ******99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.39	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-43	11	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MASSSCYNST CAACKFLRRK CLPGCIFAPY FPPEEPQKFA NVHKIFGASN VTKLLNELLP 60 HQREDAVNTL AYEAEARVRD PVYGCVGAIT FLQRQVERLE KELDAANADL IRYASCNDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-65	8	114	9	115	LOB family transfactor Ramosa2.1
5ly0_B	1e-65	8	114	9	115	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778337.1	2e-82	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_009778338.1	2e-82	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_016510977.1	2e-82	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_019248966.1	2e-82	PREDICTED: protein LATERAL ORGAN BOUNDARIES
Swissprot	Q9FML4	9e-72	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A1J6IB20	5e-81	A0A1J6IB20_NICAT; Protein lateral organ boundaries
TrEMBL	A0A1S4DC18	5e-81	A0A1S4DC18_TOBAC; protein LATERAL ORGAN BOUNDARIES-like
TrEMBL	A0A1U7WEE4	5e-81	A0A1U7WEE4_NICSY; protein LATERAL ORGAN BOUNDARIES-like
STRING	XP_009778337.1	9e-82	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	4e-74	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]