PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00428g17008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 533aa    MW: 59277.5 Da    PI: 7.5283
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00428g17008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.1e-16741135
                      GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                              C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Niben101Scf00428g17008.1  7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
                              ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.7E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-11545No hitNo description
CDDcd002023.07E-16654No hitNo description
Gene3DG3DSA:3.30.50.103.2E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003209.7E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139193.4E-11278361IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPDEFEDY  60
RVSRFKNLPV KNKEVKVLKR KKNHDNPEIG ILSDYNQGCH RKALDEDTSN RSSSGSAVSN  120
SESCAQFGSA EASDLTGPTQ SNIWEGMVPS KKRTCVGRPK QSSVEKLTKD LYTILHEQQC  180
SYWSGSSEED LLLESDKPMV SVEIGHGSVL IRHPSSLGRE EESEASSLSV DNKHYSSNEA  240
YSQLTTPPVH INKGVNSSNL VTERAKKLTG QDQIKRSKDQ LEKLQILGHH NSPLCHIDLK  300
DVLNYEEFIT HLSSDEQQQL LKYLPPVDSF SPPESLRSMF ESSHFEENLS SFQKLLAEGV  360
LDNSLSGVTV EDCRTLKRFT LCYLMKSKWV EQFNLLKDMK CKKSSSSSEV AGGPSVIGTG  420
HSGNMKRPRI GQHPKYSGAN TTMKSPKRVM LKSSYEQKEI IENDSSCFSP RSLFALPSEN  480
SFRFANESSD QDLLLDVPSN SSFPQAELLL PTANFAAQAS TSSSSVYPQL LRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774753.10.0PREDICTED: GATA transcription factor 26-like
RefseqXP_016436475.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-149GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A1S3X9650.0A0A1S3X965_TOBAC; GATA transcription factor 26-like
TrEMBLA0A1U7W7Z50.0A0A1U7W7Z5_NICSY; GATA transcription factor 26-like
STRINGXP_009774753.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-136GATA transcription factor 26