PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00439g04009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 447aa    MW: 50921.6 Da    PI: 4.8319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00439g04009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.00011273310654
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                e+Er+RR+++N+++  Lr ll  a           +iL  A+eY+ +L
  Niben101Scf00439g04009.1 273 LEAERKRRKKLNERLYALRALLDRA-----------SILGDAIEYVMEL 310
                               589*****************98666...........6777777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.626267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-8269315No hitNo description
SuperFamilySSF474596.15E-11270323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-7272323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-8273316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MELMHLMERL RPIMGLENWD YCVLWKLSED QRFLEWICCC CGGAEQNMHR CEQEILFPDS  60
STSPCRDVMF YAQALLSNQA KWLNFVPFSE SNMSNEIIGT RVLIPSPLGL LELFSAKQQK  120
FPSNGDDNTN SQNLYQQIVS PVTSRDHSDH LSYDFPLKRK NLDTSSVNFL PHFNTYNTSE  180
IENNTTTMLF DQNTSAVTHF STSMENKYMS EMDAYLQKQM MRNSSNQAGL IDDVYVKQHE  240
NGRSNSGSDS DQNEDEDDSK FRRKNGKGQS KNLEAERKRR KKLNERLYAL RALLDRASIL  300
GDAIEYVMEL EKQVKDLQLE LEERSDDDQG GRNQSQVQNE VLGQNGIDQN NRPKSGNGKL  360
SNGSHTGISA NSNGSIDPSR QNQEVEENEK LQQMEPQVEV AELDGNEFFV KVFREHKGGG  420
FVRILEALNS LGLEVTNGVL ARADKKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261281RRKNGKGQSKNLEAERKRRKK
2275282ERKRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225210.10.0PREDICTED: transcription factor ABORTED MICROSPORES
TrEMBLA0A314KTZ90.0A0A314KTZ9_NICAT; Transcription factor aborted microspores
STRINGXP_009786139.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.14e-28bHLH family protein