PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00454g02008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 202aa    MW: 22645.1 Da    PI: 9.186
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00454g02008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-18114164255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+++AeIrdp   + k  r++lg+f+t  +Aa+a++ a+ k++g
  Niben101Scf00454g02008.1 114 NYRGVRRRP-WGKFAAEIRDP---NkKGSRIWLGTFDTDVDAARAYDCAAFKMRG 164
                               59*******.**********9...4345**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.9E-23114173IPR016177DNA-binding domain
SMARTSM003801.3E-38114178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-32114172IPR001471AP2/ERF domain
PfamPF008472.6E-13114164IPR001471AP2/ERF domain
PROSITE profilePS5103224.579114172IPR001471AP2/ERF domain
PRINTSPR003674.6E-13115126IPR001471AP2/ERF domain
CDDcd000189.26E-32115174No hitNo description
PRINTSPR003674.6E-13154174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MTTQKERLTL ELIRHHLLED FTSTESFINS LNSCFSDQIS PVFTSVKTEP STSNNSLSDS  60
PTSYPNSPIS HYFSDFPEFK TNSDTNLSPT SDSCVSSNLT ISSDTNNNEN KTKNYRGVRR  120
RPWGKFAAEI RDPNKKGSRI WLGTFDTDVD AARAYDCAAF KMRGRKAILN FPIDDGKSGA  180
PANIGRKRRR GNGIQHEILI NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-29113173161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184190GRKRRRG
2185189RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257925.11e-129PREDICTED: ethylene-responsive transcription factor ERF106-like
TrEMBLA0A1J6HU701e-128A0A1J6HU70_NICAT; Ethylene-responsive transcription factor erf106
STRINGXP_009771892.11e-125(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-45ERF family protein