PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00457g05004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 286aa    MW: 31273.5 Da    PI: 7.9505
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00457g05004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018103125123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C+ C+++Fs+   L  H  +H
  Niben101Scf00457g05004.1 103 FQCKTCNRCFSSFQALGGHRASH 125
                               89**********99999998887 PP
2zf-C2H213.40.00023194216123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++Cg  F++   L  H+r+H
  Niben101Scf00457g05004.1 194 HECSICGAEFTSGQALGGHMRRH 216
                               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.9E-10102127IPR007087Zinc finger, C2H2
SuperFamilySSF576673.84E-9102125No hitNo description
SMARTSM003550.23103125IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.554103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576673.84E-9189216No hitNo description
PfamPF139129.5E-13193217IPR007087Zinc finger, C2H2
SMARTSM003550.01194216IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723194216IPR007087Zinc finger, C2H2
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQQNVDRHMN MVMKRRRTKR PRPPSPLALT IATNSCSTVE GASDGGGSGG ELDGHVANSS  60
SLSNCGIDQF AKNSEEEEDM ANCLILLAQG HNQKSQSSSL DVFQCKTCNR CFSSFQALGG  120
HRASHKKPKS TTLEEIKNSK PIEQVATCLK FNEDHVTTLS LQIPSNNNNS NSNSNNNNNN  180
SNNNNNGKSK TRVHECSICG AEFTSGQALG GHMRRHRPLP NSITIAASST SNEESHDQTK  240
NTRNFLSLDL NLPAPEDDHR QITKFSFASK EQVIVFSASP LVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11219MKRRRTKR
21822KRPRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782985.11e-162PREDICTED: zinc finger protein ZAT5-like
RefseqXP_016507626.11e-162PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X43e-50ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A1S4D2L91e-160A0A1S4D2L9_TOBAC; zinc finger protein ZAT5-like
TrEMBLA0A1U7X9731e-160A0A1U7X973_NICSY; zinc finger protein ZAT5-like
STRINGXP_009782985.11e-161(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-49C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]