PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00463g01008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 273aa MW: 29907 Da PI: 5.6072

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00463g01008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.2	2e-29	78	135	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers+ dp+ + itY +eHnh+ Niben101Scf00463g01008.1 78 DSWSWRKYGQKPIKGSPFPRGYYRCSSSkGCPARKQVERSRLDPTNLLITYCSEHNHQ 135 99**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.5E-30	68	137	IPR003657	WRKY domain
PROSITE profile	PS50811	30.767	71	137	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-25	72	137	IPR003657	WRKY domain
SMART	SM00774	1.2E-35	76	136	IPR003657	WRKY domain
Pfam	PF03106	1.0E-24	78	135	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MEDRLDRRST PFFIKQEDST GTPPDNAADS PFAGDEAAEV NMPFPRKSRR GAKKKVITVP 60 IIDADGSRSK GEVYPPPDSW SWRKYGQKPI KGSPFPRGYY RCSSSKGCPA RKQVERSRLD 120 PTNLLITYCS EHNHQFPAAT TKHHHHHPPA PSTPTTSTSN TSAGDNNAAA TATEVTITDK 180 SSPEECDVFA YQHDNGFSEL AGEWGWLSDV GTPTFMENTS SMVGSTWSDA DVALMLPIRE 240 EDQSLFGDLG ELPECSVVFR RYSVEAPCCG GTG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-20	54	137	6	79	Disease resistance protein RRS1
5w3x_D	1e-20	54	137	6	79	Disease resistance protein RRS1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593761.1	1e-177	PREDICTED: probable WRKY transcription factor 65 isoform X1
Refseq	XP_019234771.1	1e-177	PREDICTED: probable WRKY transcription factor 65 isoform X1
TrEMBL	A0A1J6KAU4	1e-176	A0A1J6KAU4_NICAT; Putative wrky transcription factor 65
STRING	XP_009593761.1	1e-176	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7468	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.1	5e-59	WRKY DNA-binding protein 69