PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00471g02020.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 142aa    MW: 15788.1 Da    PI: 5.6872
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00471g02020.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.2e-10641154196
                               TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                        B3  41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                  ++W++ +    + ++  +++ Wk+Fv++n+Lk+gD +vF+l++ s+++ ++kv
  Niben101Scf00471g02020.1  64 CGRKKWDMFY--YSNYNK--FSAEWKKFVDDNDLKVGDGLVFELSECSTKKIHFKV 115
                               45699*9999..333334..7888*******************9854666666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-1044119IPR015300DNA-binding pseudobarrel domain
CDDcd100172.97E-1244119No hitNo description
SuperFamilySSF1019361.1E-1144119IPR015300DNA-binding pseudobarrel domain
PfamPF023629.5E-862114IPR003340B3 DNA binding domain
PROSITE profilePS508639.98267121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGFMAGLPHA TNNLADLSTL MNGHRIAKAY NLTPLEIATD STGYLPKKMN KELPAAGAPA  60
VLTCGRKKWD MFYYSNYNKF SAEWKKFVDD NDLKVGDGLV FELSECSTKK IHFKVQILRG  120
DFPSELLPED EEGATVANPI EL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230315.12e-66PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A314KJF16e-65A0A314KJF1_NICAT; B3 domain-containing protein
STRINGXP_009786634.17e-64(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-08B3 family protein