PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00482g10004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 186aa    MW: 20633.3 Da    PI: 6.4835
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00482g10004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.41.6e-26361231100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h+            +lpe+er da+ss+vyeA+ar+rdPvyG++g i +lq+
  Niben101Scf00482g10004.1  36 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHR------------ELPESERADAVSSMVYEANARLRDPVYGSAGAICQLQK 108
                               7*******************************997............99************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q+++l+a+la++++e
  Niben101Scf00482g10004.1 109 QVNELQAQLAKAQAE 123
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.94435124IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-2536121IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MESSNRTVTT TTTPLSPCSV SPSRSSPSPQ RVVVTPCAAC KILRRRCAEK CVLAPYFPPN  60
DPIKFTTAHR ELPESERADA VSSMVYEANA RLRDPVYGSA GAICQLQKQV NELQAQLAKA  120
QAEIVNMQCQ QANLMALLYM EMDQSPPASP QQSFHNFTSN TFQSSITFLD DQNNNFGSLW  180
DQPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-313613111118LOB family transfactor Ramosa2.1
5ly0_B2e-313613111118LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626018.11e-106PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR03e-62LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A314KQ101e-104A0A314KQ10_NICAT; Lob domain-containing protein 1
STRINGXP_009626018.11e-106(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-54LOB domain-containing protein 1