PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00491g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 214aa MW: 24098.1 Da PI: 8.9447

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00491g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.8	2.1e-36	7	112	1	115
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL++kv++ ++++ +++++vd++k++ + +e+ewyfFs rd+ky+tg r+nrat++gyWk+ Niben101Scf00491g00001.1 7 LPPGFRFHPTDEELITCYLRNKVSDFSFTA-TAFSDVDLNKSKA-------SMGEEEWYFFSLRDRKYPTGLRTNRATEAGYWKT 83 79***********************999.88**99863.......33789************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapk 115 tgkdk +++ +g ++g+k+tLvfy+grapk Niben101Scf00491g00001.1 84 TGKDKGIFQ-GGVAIGMKRTLVFYRGRAPK 112 *****.****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-41	3	112	IPR003441	NAC domain
PROSITE profile	PS51005	35.296	7	150	IPR003441	NAC domain
Pfam	PF02365	1.3E-21	8	111	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MAEINNLPPG FRFHPTDEEL ITCYLRNKVS DFSFTATAFS DVDLNKSKAS MGEEEWYFFS 60 LRDRKYPTGL RTNRATEAGY WKTTGKDKGI FQGGVAIGMK RTLVFYRGRA PKVCRVFQKR 120 STMKKAQPTS SSQQSRECPN CDTNCTISNE IIGDSELPKL ISIDTPSNYG INNISLHNYN 180 NENMNMNFSA VTRSEGASNI NVPFVPNWSN LPSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-34	6	112	16	129	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-34	6	112	16	129	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-34	6	112	16	129	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-34	6	112	16	129	NO APICAL MERISTEM PROTEIN
3swm_A	1e-34	6	112	19	132	NAC domain-containing protein 19
3swm_B	1e-34	6	112	19	132	NAC domain-containing protein 19
3swm_C	1e-34	6	112	19	132	NAC domain-containing protein 19
3swm_D	1e-34	6	112	19	132	NAC domain-containing protein 19
3swp_A	1e-34	6	112	19	132	NAC domain-containing protein 19
3swp_B	1e-34	6	112	19	132	NAC domain-containing protein 19
3swp_C	1e-34	6	112	19	132	NAC domain-containing protein 19
3swp_D	1e-34	6	112	19	132	NAC domain-containing protein 19
4dul_A	1e-34	6	112	16	129	NAC domain-containing protein 19
4dul_B	1e-34	6	112	16	129	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767002.1	1e-129	PREDICTED: NAC domain-containing protein 100
Swissprot	Q9FLJ2	6e-53	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1U7VG00	1e-128	A0A1U7VG00_NICSY; NAC domain-containing protein 100
STRING	XP_009767002.1	1e-128	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	7e-64	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]