PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00503g08009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 464aa    MW: 50200.3 Da    PI: 9.1135
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00503g08009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.91.1e-08295321127
                               XXXXCHHHCHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkae 27 
                               e+elkre+rkq+NRe+ArrsR+RK+ e
  Niben101Scf00503g08009.1 295 ERELKREKRKQSNRESARRSRLRKQNE 321
                               89***********************87 PP
2bZIP_168.11.5e-21321383163
                               XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               e+elkre+rkq+NRe+ArrsR+RK+ae eeL+ +v++L+ eN++ k+e+++l ++ +klk e+
  Niben101Scf00503g08009.1 321 ERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQSLTVENMTVKSEINKLMDNLEKLKLEN 383
                               89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.4E-36192IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.3E-13133215No hitNo description
Gene3DG3DSA:1.20.5.1704.3E-5289320No hitNo description
PROSITE patternPS000360302317IPR004827Basic-leucine zipper domain
SMARTSM003385.6E-19321385IPR004827Basic-leucine zipper domain
PfamPF001704.7E-20321383IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.5E-13321380No hitNo description
PROSITE profilePS5021712.335323386IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-9324380No hitNo description
CDDcd147028.42E-17326373No hitNo description
PROSITE patternPS000360328343IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MGNSEDGKPS KSEKSSSPTP DQSNLHVYPD WATMQAYYGP RVAVPTYFNS AVAPGHTPHP  60
FMWGPQPMIP PYGAPYAAIY AHGGVYAHPG VPIGTHPPGH GMATSPAVSQ AMDGASLSLD  120
ASAKSSENSD RGLLAMSLGN GSADNIEGGT DHGNSQSGDT EGSTDGSDTN GAGVSERSKK  180
RSRETSPDTS GDSKTHLRRC QPTGEVNDDS EKTTVAVRPG KVGEKVMGXN DDSEKTIVAV  240
RHGKVGEKVM GTVLSPSMTT TLDMRNPAST HLKASPTNVS QLSPALPNEA WLQNERELKR  300
EKRKQSNRES ARRSRLRKQN ERELKREKRK QSNRESARRS RLRKQAEAEE LAIRVQSLTV  360
ENMTVKSEIN KLMDNLEKLK LENAALMERL KNEQLGQTEE VSLGKIDDKR LQPVGTANLL  420
ARVNNSGSLD RANNESEVYE NNSSGAKLHQ LLDSSPRTDA VAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337343RRSRLRK
2337344RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTrans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501041.10.0PREDICTED: transcriptional activator TAF-1
SwissprotQ991421e-168TAF1_TOBAC; Transcriptional activator TAF-1 (Fragment)
TrEMBLA0A1S4CJ710.0A0A1S4CJ71_TOBAC; transcriptional activator TAF-1
STRINGXP_009765847.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.14e-70G-box binding factor 3
Publications ? help Back to Top
  1. Oeda K,Salinas J,Chua NH
    A tobacco bZip transcription activator (TAF-1) binds to a G-box-like motif conserved in plant genes.
    EMBO J., 1991. 10(7): p. 1793-802
    [PMID:2050116]