PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00508g10011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 77aa MW: 8637.15 Da PI: 10.5337

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00508g10011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.1	3e-25	9	61	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-..EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCda..evaviifsstgklyeyss 51 k+i++k rqvtfskRr+g+lKKA+ LS+LCd+ +vav++fss+g+ly++ss Niben101Scf00508g10011.1 9 KPIKDKNSRQVTFSKRRKGLLKKAKQLSILCDVdvDVAVVVFSSRGRLYDFSS 61 78***************************862268************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.4E-31	1	62	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.19E-25	1	68	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.805	1	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-15	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-23	11	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-15	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-15	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MGRKKVEIKP IKDKNSRQVT FSKRRKGLLK KAKQLSILCD VDVDVAVVVF SSRGRLYDFS 60 STNSGAVCAY HEALVFC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	6e-17	1	67	1	65	Myocyte-specific enhancer factor 2B
1tqe_Q	6e-17	1	67	1	65	Myocyte-specific enhancer factor 2B
1tqe_R	6e-17	1	67	1	65	Myocyte-specific enhancer factor 2B
1tqe_S	6e-17	1	67	1	65	Myocyte-specific enhancer factor 2B
6c9l_A	6e-17	1	67	1	65	Myocyte-specific enhancer factor 2B
6c9l_B	6e-17	1	67	1	65	Myocyte-specific enhancer factor 2B
6c9l_C	6e-17	1	67	1	65	Myocyte-specific enhancer factor 2B
6c9l_D	6e-17	1	67	1	65	Myocyte-specific enhancer factor 2B
6c9l_E	6e-17	1	67	1	65	Myocyte-specific enhancer factor 2B
6c9l_F	6e-17	1	67	1	65	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019237677.1	3e-33	PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
Swissprot	Q8RU31	7e-22	MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBL	A0A1J6KKE2	2e-31	A0A1J6KKE2_NICAT; Agamous-like mads-box protein agl15 (Fragment)
TrEMBL	A0A1S4AZG2	6e-31	A0A1S4AZG2_TOBAC; agamous-like MADS-box protein AGL27
STRING	XP_009625850.1	4e-32	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	9e-19	AGAMOUS-like 18

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dreni L, et al. The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant J., 2007. 52(4): p. 690-9 [PMID:17877710]