PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00526g00018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 340aa    MW: 38652 Da    PI: 4.5649
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00526g00018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.58.9e-5261501128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..................kvkaeekewyfFskrdkk 67 
                               lppGfrFhPtdeelv +yLk+k++g ++el evi+ +d+yk++Pw+Lp                    + +++ ew+fF++rdkk
  Niben101Scf00526g00018.1   6 LPPGFRFHPTDEELVGYYLKRKTDGLEIEL-EVIPVIDLYKFDPWELPDeptallaltscpknaeksFLPKRDMEWFFFCPRDKK 89 
                               79****************************.99**************955899999999887665543334778*********** PP

                       NAM  68 yatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               y++g+r+nrat+sgyWkatgkd++v++++ e+vg +ktLvfy grap g++tdWvmheyrl
  Niben101Scf00526g00018.1  90 YPNGSRTNRATRSGYWKATGKDRKVTCHQPEVVGYRKTLVFYCGRAPLGNRTDWVMHEYRL 150
                               ***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-563173IPR003441NAC domain
PROSITE profilePS5100555.486173IPR003441NAC domain
PfamPF023659.7E-307150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGGTSLPPGF RFHPTDEELV GYYLKRKTDG LEIELEVIPV IDLYKFDPWE LPDEPTALLA  60
LTSCPKNAEK SFLPKRDMEW FFFCPRDKKY PNGSRTNRAT RSGYWKATGK DRKVTCHQPE  120
VVGYRKTLVF YCGRAPLGNR TDWVMHEYRL CDDVSQGTPT FQGPFALCRI IKRNDASLKT  180
SDTSVAVSNE PVVLTAETPT QMTYMSNDSN YSTPIASPYE GTNTANFWMS TDMILDSSKE  240
CPQGQSTCEN YPNYDFSNMT LTQPNDRFEF TSSSSFPSFR GEVELSGDLS SYGCVSPYSV  300
HGNYTGFYGN DDMSYEECEC WNQANMGDFN GLWLHEDNFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-50517916171NO APICAL MERISTEM PROTEIN
1ut4_B2e-50517916171NO APICAL MERISTEM PROTEIN
1ut7_A2e-50517916171NO APICAL MERISTEM PROTEIN
1ut7_B2e-50517916171NO APICAL MERISTEM PROTEIN
4dul_A2e-50517916171NAC domain-containing protein 19
4dul_B2e-50517916171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760809.10.0PREDICTED: protein ATAF2-like
RefseqXP_016501877.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotO496971e-94NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A1S4CKV90.0A0A1S4CKV9_TOBAC; NAC domain-containing protein 86-like
TrEMBLA0A1U7VEQ20.0A0A1U7VEQ2_NICSY; protein ATAF2-like
STRINGXP_009760809.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62561635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.12e-96NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]