PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00530g06014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 360aa    MW: 40218.9 Da    PI: 5.3986
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00530g06014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY51.61.8e-16143190149
                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEE CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvve 49 
                               ldDg++WrKYGqK++ g+++pr    Ct +   gC ++k+v+rs+edp++++
  Niben101Scf00530g06014.1 143 LDDGFSWRKYGQKDILGAKYPR----CTLRhvqGCLATKQVQRSDEDPTIFK 190
                               59*****************997....7766566***************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081114.401138189IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-15140189IPR003657WRKY domain
SuperFamilySSF1182904.71E-14142189IPR003657WRKY domain
SMARTSM007741.9E-23143196IPR003657WRKY domain
PfamPF031061.2E-14144189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MENYGANNNE LNRIISELTQ GRDLVHQLKL QLNAPYSSSS SLETTRDFLI HNIQYKFDKA  60
LSLLQYSTGD TSNSLLPLSN SVPIYNFGRS ESPPSFTASP PHSEDSDRDL EPKDPATRKR  120
KSSTPRWTKQ VQVCPGAPIE GTLDDGFSWR KYGQKDILGA KYPRCTLRHV QGCLATKQVQ  180
RSDEDPTIFK EDTCNQGGGS ANNNNVMNPA PSAIRPQNQE PNLGTGSRNE HQQIVSVRPH  240
QNSQEIILNF QRNLNISNDN NFNFNTDPNN VPFSTFASSS NIKADQDYSF VPNSIIQSNN  300
FVENFPPSYM SAGTSGSSSS YFGMSSNSEM NNFGGKQNDY QFNSMGYESN FPFDYQEFSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121TRKRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019239237.10.0PREDICTED: probable WRKY transcription factor 30
TrEMBLA0A1J6JVL10.0A0A1J6JVL1_NICAT; Putative wrky transcription factor 41
STRINGXP_009801586.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.14e-33WRKY DNA-binding protein 30