PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00563g01001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 352aa MW: 39383 Da PI: 8.412

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00563g01001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.8	1e-53	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWka Niben101Scf00563g01001.1 16 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKA 99 79**************************.88***********988899*************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk+vl++ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl Niben101Scf00563g01001.1 100 TGTDKPVLTAgGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 143 ****9977788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-65	9	176	IPR003441	NAC domain
PROSITE profile	PS51005	61.979	16	176	IPR003441	NAC domain
Pfam	PF02365	4.1E-28	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MESTDSSSGS HQQPHLPPGF RFHPTDEELV VHYLKKKAAS VPLPVAIIAE VDLYKFDPWE 60 LPAKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLTAG GTQKVGVKKA 120 LVFYGGKPPK GVKTNWIMHE YRLADNKPNN KPPGCDVANK KSLRLDDWVL CRIYKKNNTQ 180 RPIDHERDDL NDIMGSSIPA TCIPNNSMSI FGQPKANSNY TTLLETHDQN IYDQGMQFSS 240 KSSSQLPVNV LSTSPSLLPS NRSLNGLYWN EEAAANDNSQ STKRFLTENI NNMDDGLSMN 300 VRTDHEQNGS IASLLSQLPQ TPSLQQQQQQ ILQGSLSDGV FRQPYSGMNW YS

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MESTDSSSGS HQQPHLPPGF RFHPTDEELV VHYLKKKAAS VPLPVAIIAE VDLYKFDPWE  60
LPAKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLTAG GTQKVGVKKA  120
LVFYGGKPPK GVKTNWIMHE YRLADNKPNN KPPGCDVANK KSLRLDDWVL CRIYKKNNTQ  180
RPIDHERDDL NDIMGSSIPA TCIPNNSMSI FGQPKANSNY TTLLETHDQN IYDQGMQFSS  240
KSSSQLPVNV LSTSPSLLPS NRSLNGLYWN EEAAANDNSQ STKRFLTENI NNMDDGLSMN  300
VRTDHEQNGS IASLLSQLPQ TPSLQQQQQQ ILQGSLSDGV FRQPYSGMNW YS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-74	10	178	9	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769986.1	0.0	PREDICTED: NAC transcription factor 25
Refseq	XP_016484530.1	0.0	PREDICTED: NAC transcription factor 56-like
Swissprot	Q9LD44	1e-116	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A1S4B6F4	0.0	A0A1S4B6F4_TOBAC; NAC transcription factor 56-like
TrEMBL	A0A1U7VYE5	0.0	A0A1U7VYE5_NICSY; NAC transcription factor 25
STRING	XP_009769986.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-111	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]