PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00570g05012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 368aa MW: 42632.3 Da PI: 7.0713

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00570g05012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.1	2.3e-36	126	235	2	110
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 + kkdrhski+T++g RdRR+Rls+++a++fFdLqd+L fdk+sktieWL+ ++k aikel ++ +++ e +++s++++ ++s Niben101Scf00570g05012.1 126 TEKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLAFDKASKTIEWLFSKSKNAIKELSRN--IPQ-EINDNSDQNNLMSES 207 679*************************************************************..333.232233333333222 PP TCP 87 sg....kaaksaakskksqksaasalnl 110 + +++k + ++k++ +a+++ n Niben101Scf00570g05012.1 208 HIleceDHRKLRKMESKDKPKAKTMENT 235 2233432222222222222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-37	126	238	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	36.145	128	186	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MFPKSNINDH FSYTSQELLQ HSYTHHENPN STSIIVEDHP FFLNNFPSPF LDDHESSLSL 60 IFSHQQKQQE LEASDHHPDA EIDPNNSRFE RANVKFIEDQ SSNPSAEPVS PSSRKRKLSA 120 KPRKRTEKKD RHSKICTAQG VRDRRMRLSL QIARKFFDLQ DMLAFDKASK TIEWLFSKSK 180 NAIKELSRNI PQEINDNSDQ NNLMSESHIL ECEDHRKLRK MESKDKPKAK TMENTKEKVM 240 IIGHKKGKEL YETNRKTVEA NSQSLENKFA NVGIMESYLG GTSSSISSIF DFENNGVRKG 300 SIDYFDNCYM GFLENWDNKN PNISCSTTTT NEVQIPFAGN NNTSSIDLDN FRYQFQFLDQ 360 ENHFSCRH

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MFPKSNINDH FSYTSQELLQ HSYTHHENPN STSIIVEDHP FFLNNFPSPF LDDHESSLSL  60
IFSHQQKQQE LEASDHHPDA EIDPNNSRFE RANVKFIEDQ SSNPSAEPVS PSSRKRKLSA  120
KPRKRTEKKD RHSKICTAQG VRDRRMRLSL QIARKFFDLQ DMLAFDKASK TIEWLFSKSK  180
NAIKELSRNI PQEINDNSDQ NNLMSESHIL ECEDHRKLRK MESKDKPKAK TMENTKEKVM  240
IIGHKKGKEL YETNRKTVEA NSQSLENKFA NVGIMESYLG GTSSSISSIF DFENNGVRKG  300
SIDYFDNCYM GFLENWDNKN PNISCSTTTT NEVQIPFAGN NNTSSIDLDN FRYQFQFLDQ  360
ENHFSCRH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019264334.1	0.0	PREDICTED: transcription factor TCP12-like
TrEMBL	A0A314L4T7	0.0	A0A314L4T7_NICAT; Transcription factor tcp12
STRING	XP_009760495.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-32	TCP domain protein 12