PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00571g06006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 239aa    MW: 27044.1 Da    PI: 8.728
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00571g06006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.5e-082952226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                              k++lC+ffar G C  G+ C F H+
  Niben101Scf00571g06006.1 29 KRVLCKFFAR-GACLKGEHCDFLHD 52
                              99********.*************6 PP
2zf-CCCH23.41e-076080526
                              --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                               C ++++ G+C +G+rC++ H+
  Niben101Scf00571g06006.1 60 VCTYYQK-GICAFGSRCRYEHV 80
                              5******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.0092754IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-52753IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-62855IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-82952IPR000571Zinc finger, CCCH-type
PfamPF156631.9E-73290No hitNo description
PROSITE profilePS5010313.315582IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-55779IPR000571Zinc finger, CCCH-type
SMARTSM003560.00225781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.109.6E-10141208IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.79E-12141212No hitNo description
CDDcd001629.49E-4147208No hitNo description
PROSITE profilePS5008912.238148206IPR001841Zinc finger, RING-type
SMARTSM001849.4E-7148205IPR001841Zinc finger, RING-type
PfamPF000972.5E-7148205IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180172181IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
TATSPRLQSA ELTSQFIFNS QSKVETMSKR VLCKFFARGA CLKGEHCDFL HDSKDVPNNV  60
CTYYQKGICA FGSRCRYEHV KITRSQPSLP SSSASIVELK RVNATDQSIC SSSTAGNCPQ  120
GKKEEHMKTC ETREKQLDLL KHSQEIECGV CLERVLSKTI MAERKFGILS ECDHPFCISC  180
IRNWRSSSPS IGMDVNSTLR ACPICRKHSY FVIPSVIWYS TKEEKQEIIS SYKAKLRFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230147.11e-152PREDICTED: E3 ubiquitin-protein ligase makorin-like
SwissprotE0X9N49e-91C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A314KK471e-151A0A314KK47_NICAT; Zinc finger ccch domain-containing protein 69
STRINGXP_009781754.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-88C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]