PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00592g11013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 181aa    MW: 20905.9 Da    PI: 7.3589
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00592g11013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.3e-1958153199
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               f+  + p +v+++  l +p +f++++ ++  e++ ++l+ ++gr+W+ +++++ +  r+  + GW+eF+ +n Lk+ D++vF+l+
  Niben101Scf00592g11013.1  58 FIVSMQPTHVSRNFHLNIPCNFFRRYFKE--EETVVILRASDGRTWRARCSFQSNCARI-HSPGWREFAVDNSLKVHDTCVFELM 139
                               67789999******************855..556899**************99998885.577*********************9 PP

                               SSSEE..EEEEE-S CS
                        B3  86 grsefelvvkvfrk 99 
                               +  e  l+v++fr+
  Niben101Scf00592g11013.1 140 EGIELVLNVTIFRA 153
                               88888899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-2652156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-2452156IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-2256152No hitNo description
PfamPF023626.0E-1858153IPR003340B3 DNA binding domain
SMARTSM010198.8E-1758154IPR003340B3 DNA binding domain
PROSITE profilePS5086313.56358154IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MRIFLCGGHF VDYIVKHDIL WSFFCLSDFT SSEMTNTWQE KGYTLIDAQC SKLGNPYFIV  60
SMQPTHVSRN FHLNIPCNFF RRYFKEEETV VILRASDGRT WRARCSFQSN CARIHSPGWR  120
EFAVDNSLKV HDTCVFELME GIELVLNVTI FRADSCFLKD SLPLCRQGFP ACTSTSNSQA  180
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-133015521144B3 domain-containing transcription factor VRN1
4i1k_B1e-133015521144B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240661.11e-100PREDICTED: uncharacterized protein LOC109220660 isoform X1
RefseqXP_019240662.11e-100PREDICTED: uncharacterized protein LOC109220660 isoform X2
TrEMBLA0A1S4C2V38e-89A0A1S4C2V3_TOBAC; uncharacterized protein LOC107814576 isoform X1
TrEMBLA0A1S4C3758e-89A0A1S4C375_TOBAC; uncharacterized protein LOC107814576 isoform X2
TrEMBLA0A1U7XZ378e-89A0A1U7XZ37_NICSY; uncharacterized protein LOC104243691 isoform X2
TrEMBLA0A1U7YEL28e-89A0A1U7YEL2_NICSY; uncharacterized protein LOC104243691 isoform X1
STRINGXP_009797235.11e-89(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132901215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.16e-15related to vernalization1 1