PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00594g05010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 376aa MW: 42507.2 Da PI: 6.5111

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00594g05010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	169.2	4.9e-53	79	180	1	99
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa Niben101Scf00594g05010.1 79 QLQTFWANQyqeIEHVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAA 163 89****99999******************************************************************** PP NF-YC 83 vtrtdifdflvdivprd 99 +trtdifdflvdi+ ++ Niben101Scf00594g05010.1 164 ITRTDIFDFLVDIMAQH 180 **********99876 PP
2	NF-YC	175.5	5.2e-55	198	301	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa Niben101Scf00594g05010.1 198 QLQTFWANQyqeIEHVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAA 282 89****99999******************************************************************** PP NF-YC 83 vtrtdifdflvdivprdel 101 +trtdifdflvdivpr++l Niben101Scf00594g05010.1 283 ITRTDIFDFLVDIVPREDL 301 **************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.4E-33	68	173	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.4E-37	94	165	IPR009072	Histone-fold
Pfam	PF00808	4.9E-22	101	164	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	3.89E-33	188	292	IPR009072	Histone-fold
Pfam	PF00808	4.9E-22	220	283	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	5.4E-38	221	298	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MDHHGNGQPP GIGVVTSSAP IYGAPYQANQ MAGPSPAVSA GAIQSPQTAG LSASSAQMAQ 60 HQLAYQHIHQ QQQQQLQQQL QTFWANQYQE IEHVTDFKNH SLPLARIKKI MKADEDVRMI 120 SAEAPVVFAR ACEMFILELT LRAWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIMAQH 180 QLAYQHIHQQ QQQQLQQQLQ TFWANQYQEI EHVTDFKNHS LPLARIKKIM KADEDVRMIS 240 AEAPVVFARA CEMFILELTL RAWNHTEENK RRTLQKNDIA AAITRTDIFD FLVDIVPRED 300 LKDEVLASIP RGTLPVGGPT EGLPFYYSMP PQSAPPVGAS GMYMGKPVDQ ALYAQQPRPY 360 MAQPIWPQQQ QPPSDS

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MDHHGNGQPP GIGVVTSSAP IYGAPYQANQ MAGPSPAVSA GAIQSPQTAG LSASSAQMAQ  60
HQLAYQHIHQ QQQQQLQQQL QTFWANQYQE IEHVTDFKNH SLPLARIKKI MKADEDVRMI  120
SAEAPVVFAR ACEMFILELT LRAWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIMAQH  180
QLAYQHIHQQ QQQQLQQQLQ TFWANQYQEI EHVTDFKNHS LPLARIKKIM KADEDVRMIS  240
AEAPVVFARA CEMFILELTL RAWNHTEENK RRTLQKNDIA AAITRTDIFD FLVDIVPRED  300
LKDEVLASIP RGTLPVGGPT EGLPFYYSMP PQSAPPVGAS GMYMGKPVDQ ALYAQQPRPY  360
MAQPIWPQQQ QPPSDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	8e-57	87	298	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	276	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269\|PubMed:25105952}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019263801.1	1e-125	PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1
Refseq	XP_019263802.1	1e-125	PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X2
Swissprot	Q8L4B2	1e-82	NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBL	A0A314L5H7	1e-123	A0A314L5H7_NICAT; Nuclear transcription factor y subunit c-9
STRING	XP_009590081.1	1e-124	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3422	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.4	3e-79	nuclear factor Y, subunit C9

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714] Bi C,Ma Y,Wang XF,Zhang DP Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis. Plant Mol. Biol., 2017. 95(4-5): p. 425-439 [PMID:28924726] Liu X, et al. Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering. Plant Physiol., 2018. 177(1): p. 105-114 [PMID:29599268]