PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00603g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 603aa    MW: 67077.5 Da    PI: 6.3939
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00603g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.9e-12434480455
                               HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Niben101Scf00603g01001.1 434 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAHITELQ 480
                               799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-5448236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.475430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.42E-18433495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.91E-14433484No hitNo description
Gene3DG3DSA:4.10.280.102.4E-17434493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9434480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MGLGNMLWSD EDKAMVAAVL GTKAFDYLMS SSVSAECSLM AMGNDENMQN KLSDLVERPN  60
GANFSWNYAI FWQISRSKSG ELVLGWGDGC CREPREGEGS EITRILNLRL ENEAQQRMRK  120
KVLEKLHMLF GGTDEDNYVF GLDEVTDTEM LFLASMYFSF PHGKGGPGKC FGSGKHVWLS  180
DVMKSSVDYC SRSFLMKSAG LQTIVLIPTD VGVVELGSVR AISESLELVQ SIKSCFSSFL  240
SLVRAKQAGS VTVVAEKNDG NGSPYSSSFA SEQPNGIPKI FGQNLNSGCT PFREKLAVWK  300
AEDRPLETYQ NGNRAQFMNA RNGLRAASWA SFSNMKPMNS MDPYRPQIPA NNVRDFVNGT  360
REEFHINNFQ HQKNASMQID FTNSRPVISP AHTVESEHSD VEASCKEDHA GPADDRRPRK  420
RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAHITELQ  480
KKLRDMESER ERLGSMSRDA NTLAQESTNS ETQNQIPDIN VEAANDEVVV RVRCALETHP  540
VSRVIEVFKE ARVDVVESKL AAGNDTVYHT FVVESSGSEQ LTKEKLMAAF SGESNALRPS  600
PVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-28428490264Transcription factor MYC2
5gnj_B3e-28428490264Transcription factor MYC2
5gnj_E3e-28428490264Transcription factor MYC2
5gnj_F3e-28428490264Transcription factor MYC2
5gnj_G3e-28428490264Transcription factor MYC2
5gnj_I3e-28428490264Transcription factor MYC2
5gnj_M3e-28428490264Transcription factor MYC2
5gnj_N3e-28428490264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415423RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264739.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A1J6J2V00.0A0A1J6J2V0_NICAT; Transcription factor bhlh13
STRINGXP_009770264.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-171bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]