PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00625g01006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 167aa    MW: 19119.6 Da    PI: 10.0875
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00625g01006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-052345123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ykC+ C++ F++   L  H+++H
  Niben101Scf00625g01006.1 23 YKCSFCKREFRSAQALGGHMNVH 45
                              9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.21E-71949No hitNo description
Gene3DG3DSA:3.30.160.605.1E-52048IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4272350IPR007087Zinc finger, C2H2
SMARTSM003550.00242345IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-72346IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MKFKENTHIE VWDSASIWPE RDYKCSFCKR EFRSAQALGG HMNVHRRDRA KLRLLHYSPS  60
PSYDNTNSSP KKPNHNPSIS SSSSSSSPRF NFTGCYLKGE IAKSTLSKKV SLGVKPPADF  120
TKRNNENRVL KKREFVTLDF NMGLLQTNAK EDNVDMDLDL ELRLGYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-121845229superman protein
2l1o_A2e-121845229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788060.11e-108PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_016486680.11e-108PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1S4BCM51e-107A0A1S4BCM5_TOBAC; transcriptional regulator SUPERMAN-like
TrEMBLA0A1U7XNJ21e-107A0A1U7XNJ2_NICSY; transcriptional regulator SUPERMAN-like
STRINGXP_009788060.11e-108(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-19C2H2 family protein