PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00643g01010.1
Common NameWRKY17
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 349aa    MW: 38615.6 Da    PI: 10.2121
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00643g01010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.2e-31277334359
                               -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Niben101Scf00643g01010.1 277 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHS 334
                               99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-17225273IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.5E-33263334IPR003657WRKY domain
PROSITE profilePS5081130.733270336IPR003657WRKY domain
SuperFamilySSF1182904.45E-27272334IPR003657WRKY domain
SMARTSM007741.2E-37275335IPR003657WRKY domain
PfamPF031063.2E-27277333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAVELMTSGY SRRNSFSTKM EENAVQEAAT AGLQSVEKLI RLLSQSHQNQ QQQQQQQKLD  60
QNPSVSADYT AVADVAVNKF KKFISLLDKN RTGHARFRKG PISTPPPKPQ QQILDQNSTK  120
NQNLQIEETE KPQINTPKIY CPTPTQRLPP LPHNHLQLVK NGSIERKESS TTINFASASP  180
ANSFMSSLTG ETESLQQSLS SGFQITNLST VSSAGRPPLS TSSFKRKCSS MDDTAVKCNS  240
AGGSSGRCHC PKKRKSRLKR VVRVPAISMK MADIPPDDYS WRKYGQKPIK GSPHPRGYYK  300
CSSVRGCPAR KHVERALDDP TMLIVTYEGE HNHSHSITES PAAHVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21263333271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604893.10.0PREDICTED: probable WRKY transcription factor 7
RefseqXP_016499499.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-103WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A089X5B80.0A0A089X5B8_NICBE; WRKY17
STRINGXP_009604893.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-90WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Yan H, et al.
    The cotton WRKY transcription factor GhWRKY17 functions in drought and salt stress in transgenic Nicotiana benthamiana through ABA signaling and the modulation of reactive oxygen species production.
    Plant Cell Physiol., 2014. 55(12): p. 2060-76
    [PMID:25261532]